JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31A7_chr9_61185036_61201280	0/0	a0014	1347	2	1	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0015	1347	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0016	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0017	1347	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0018	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0019	1347	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0020	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0021	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0022	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0023	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0024	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0025	1347	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0026	1343	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0027	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0028	1347	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0029	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0030	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0031	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0032	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0033	1347	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0034	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0035	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0036	1343	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0037	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0038	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0039	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0040	1347	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	a0041	1347	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31C1_chr9_87912962_87928657	0/0	a0001	1188	79	12	9	53	0	5	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/1	a0002	1188	73	10	20	20	5	17	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0003	1182	46	1	10	33	0	2	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	1/0	a0004	1188	42	11	21	0	5	4	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0005	1155	37	0	4	23	1	9	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0006	1188	19	14	1	4	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0007	1188	8	8	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0008	1188	7	0	0	4	0	3	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0009	1188	7	7	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0010	1188	7	0	1	0	1	5	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0011	1188	5	1	3	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0012	1194	5	5	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0013	82	4	4	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0014	1188	3	1	0	0	2	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0015	1188	3	0	3	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0016	1188	3	0	0	3	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0017	1188	2	0	1	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0018	1188	2	2	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0019	1188	2	1	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0020	1188	2	0	0	2	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0021	1188	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0022	1194	2	2	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657