JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31C1_chr9_87912962_87928657	0/0	a0023	1068	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0024	1155	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0025	1188	1	0	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0026	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0027	1140	1	0	0	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0028	1182	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0029	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0030	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0031	1188	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0032	1188	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0033	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0034	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0035	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0036	93	1	0	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0037	1188	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0038	1155	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0039	1155	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0040	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0041	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0042	1188	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0043	1188	1	0	0	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0044	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0045	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0046	1182	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0047	1182	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0048	1182	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	a0049	1188	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C2_chr9_88124305_88143475	0/0	a0000	0	5	1	0	0	0	4	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0001	1134	149	25	22	86	2	14	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	1/1	a0002	1134	85	15	39	2	13	14	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0003	1134	55	0	1	53	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0004	1146	23	0	0	22	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0005	1053	22	1	7	10	2	2	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0006	1134	16	14	2	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0007	1053	14	2	6	5	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0008	1134	8	8	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0009	1134	7	0	0	7	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0010	1135	5	5	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0011	1134	5	0	0	4	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0012	1134	5	1	1	0	0	3	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0013	1134	5	0	0	5	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0014	1134	4	4	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0015	1135	3	3	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0016	1134	3	0	2	0	1	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0017	1134	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0018	1134	2	0	0	0	0	2	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0019	1134	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0020	1134	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0021	1134	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	a0022	1134	1	0	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475