JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BABAM2_chr2_27885729_28343901	0/0	a0002	383	1	0	1	0	0	0	copy fasta	BABAM2	chr2	27885729	28343901
BACE1_chr11_117280698_117321256	1/1	a0001	501	397	91	77	165	18	44	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	a0002	501	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	a0003	501	1	0	0	1	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	a0004	501	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE2_chr21_41163160_41287530	1/1	a0001	518	271	93	64	64	12	36	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	a0002	518	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACH1_chr21_29293922_29351148	1/1	a0001	736	346	60	76	163	10	35	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	a0002	736	16	14	2	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	a0003	736	3	3	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	a0004	736	1	0	0	0	0	1	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	a0005	736	1	1	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	a0006	736	1	0	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH2_chr6_89921528_90301843	1/1	a0001	841	188	64	47	46	3	26	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	a0002	841	3	3	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	a0003	841	1	1	0	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	a0004	841	1	0	1	0	0	0	copy fasta	BACH2	chr6	89921528	90301843
BACH2_chr6_89921528_90301843	0/0	a0005	841	1	0	0	0	1	0	copy fasta	BACH2	chr6	89921528	90301843
BAD_chr11_64264830_64289665	1/1	a0001	168	387	93	74	160	16	42	copy fasta	BAD	chr11	64264830	64289665
BAD_chr11_64264830_64289665	0/0	a0002	168	1	1	0	0	0	0	copy fasta	BAD	chr11	64264830	64289665
BAG1_chr9_33247471_33269708	1/1	a0001	16	348	90	60	158	6	32	copy fasta	BAG1	chr9	33247471	33269708
BAG2_chr6_57167326_57194833	1/1	a0001	211	244	80	54	74	10	24	copy fasta	BAG2	chr6	57167326	57194833
BAG3_chr10_119646380_119682819	1/1	a0001	575	297	82	45	125	10	33	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0002	575	77	10	13	49	0	5	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0003	575	30	1	15	0	2	12	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0004	575	3	0	1	0	2	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0005	575	3	0	0	3	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0006	575	2	2	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0007	575	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0008	575	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0009	575	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0010	575	1	0	1	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0011	575	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0012	575	1	0	0	1	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0013	575	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG3_chr10_119646380_119682819	0/0	a0014	575	1	1	0	0	0	0	copy fasta	BAG3	chr10	119646380	119682819
BAG4_chr8_38171855_38218301	1/1	a0001	457	300	69	56	143	12	18	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0002	457	1	0	0	0	0	1	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0003	457	1	0	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0004	457	1	0	1	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0005	457	1	0	0	0	0	1	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0006	457	1	0	0	1	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG4_chr8_38171855_38218301	0/0	a0007	457	1	1	0	0	0	0	copy fasta	BAG4	chr8	38171855	38218301
BAG5_chr14_103551551_103567657	1/1	a0001	447	404	88	72	182	16	44	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	a0002	447	4	4	0	0	0	0	copy fasta	BAG5	chr14	103551551	103567657
BAG5_chr14_103551551_103567657	0/0	a0003	447	2	0	0	0	0	2	copy fasta	BAG5	chr14	103551551	103567657
BAG6_chr6_31634028_31657661	0/1	a0001	1162	224	29	43	111	10	30	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	a0002	1162	198	60	37	80	7	14	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	a0003	1162	3	3	0	0	0	0	copy fasta	BAG6	chr6	31634028	31657661
BAG6_chr6_31634028_31657661	0/0	a0004	1162	1	0	0	1	0	0	copy fasta	BAG6	chr6	31634028	31657661