JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31D4_chr9_81923428_81939998	0/0	a0011	917	3	3	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0012	917	3	2	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0013	917	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0014	917	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0015	917	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0016	917	2	2	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0017	917	2	0	0	2	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0018	917	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0019	917	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0020	917	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0021	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0022	917	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0023	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0024	917	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0025	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0026	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0027	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0028	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0029	917	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0030	917	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0031	917	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	a0032	917	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31E1_chr9_87877877_87893903	0/0	a0001	1445	103	10	28	43	7	15	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	1/1	a0002	1445	76	4	24	20	5	21	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0003	1445	70	3	9	52	3	3	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0004	1445	64	7	3	54	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0005	1445	24	0	1	19	0	4	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0006	1445	24	23	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0007	1445	22	11	7	0	0	4	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0008	1445	14	2	0	11	0	1	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0009	1445	8	8	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0010	1445	6	5	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0011	1445	4	4	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0012	1445	4	0	0	4	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0013	1445	3	2	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0014	1445	3	3	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0015	1445	3	0	1	2	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0016	1445	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0017	1445	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0018	1445	2	0	0	2	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0019	1445	2	0	1	0	1	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0020	1445	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0021	1445	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0022	1445	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0023	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0024	1445	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0025	1445	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0026	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0027	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0028	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903