JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA5_chr4_122918078_123324433	0/0	a0002	893	19	18	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0003	893	10	3	1	1	0	5	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0004	893	2	0	1	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0005	893	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0006	893	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0007	893	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	a0008	893	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA6L_chr9_4593316_4671480	1/1	a0001	392	280	77	56	107	7	31	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0002	392	95	9	11	73	0	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0003	392	17	4	8	2	1	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0004	392	3	0	0	3	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0005	392	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0006	392	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0007	366	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0008	392	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0009	392	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0010	392	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0011	392	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0012	392	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0013	392	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0014	392	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0015	392	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	a0016	392	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6_chr1_48290373_48477204	1/0	a0001	488	223	66	36	96	9	15	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/1	a0002	488	93	2	21	51	7	11	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	a0003	488	3	0	3	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	a0004	488	2	0	2	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	a0005	488	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA7_chr14_88380657_88443460	1/0	a0001	599	171	36	20	100	6	8	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0002	599	131	27	23	58	6	17	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/1	a0003	599	30	3	12	5	2	7	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0004	599	14	13	1	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0005	599	7	4	0	3	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0006	599	5	5	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0007	599	2	2	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0008	599	1	1	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0009	599	1	0	0	1	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0010	599	1	1	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	a0011	599	1	0	0	1	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA9_chr5_95653315_95687991	1/1	a0001	254	362	83	65	149	18	45	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	a0002	254	15	9	6	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	a0003	254	2	0	0	1	0	1	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	a0004	254	1	0	1	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATC1L_chr21_46156160_46189459	0/0	a0001	340	190	33	55	57	14	31	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0002	340	21	20	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/1	a0003	340	11	1	6	2	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0004	340	9	4	2	0	1	2	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0005	340	8	7	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0006	340	3	3	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0007	340	3	2	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459