JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATC1L_chr21_46156160_46189459	0/0	a0008	340	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0009	340	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0010	340	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0011	331	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0012	340	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	a0013	340	1	0	0	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATS1_chr6_44337650_44385179	1/1	a0001	300	214	76	29	78	8	21	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	a0002	300	173	13	37	102	6	15	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	a0003	300	4	4	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	a0004	300	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS2L_chr2_200301693_200487264	1/1	a0001	558	282	60	47	129	6	38	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0002	558	11	11	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0003	558	3	2	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0004	558	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0005	558	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0006	558	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	a0007	558	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2_chr12_49362462_49532425	1/1	a0001	545	155	82	28	18	7	18	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	a0002	545	1	0	0	0	1	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	a0003	545	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	a0004	545	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPC24_chr19_11140493_11160782	1/1	a0001	197	432	96	80	196	16	42	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	a0002	197	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	a0003	197	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC25_chr2_168865891_168895430	0/0	a0001	224	355	92	64	152	16	31	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	a0002	224	5	4	0	0	0	1	copy fasta	SPC25	chr2	168865891	168895430
SPCS1_chr3_52701106_52716148	1/1	a0001	102	410	92	76	182	16	42	copy fasta	SPCS1	chr3	52701106	52716148
SPCS2_chr11_74944266_74984033	1/1	a0001	226	378	98	60	158	18	42	copy fasta	SPCS2	chr11	74944266	74984033
SPCS3_chr4_176314966_176337245	1/1	a0001	180	469	100	80	221	18	48	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	a0002	180	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPDEF_chr6_34532802_34561329	1/1	a0001	335	329	77	59	139	14	38	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0002	335	45	15	9	20	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0003	335	3	2	1	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0004	335	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0005	335	1	0	1	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0006	335	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0007	335	1	0	0	0	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	a0008	335	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDL1_chr5_169578773_169609778	0/1	a0001	605	245	56	43	110	9	26	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	1/0	a0002	605	141	28	29	67	4	12	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0003	605	2	1	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0004	605	2	2	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0005	605	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0006	605	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0007	605	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0008	605	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0009	605	1	0	0	1	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0010	605	1	0	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0011	605	1	0	0	0	1	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	a0012	605	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778