JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPDYE17_chr7_77017306_77037361	0/0	a0011	265	1	0	0	0	0	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	a0012	265	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE18_chr7_77045391_77067558	1/0	a0001	352	370	81	72	156	16	44	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/1	a0002	352	28	0	2	24	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0003	352	6	6	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0004	352	4	0	0	4	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0005	352	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0006	352	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0007	352	1	0	0	0	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0008	352	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0009	352	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0010	352	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0011	352	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	a0012	352	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE1_chr7_43992897_44015124	1/0	a0001	376	195	45	39	81	12	17	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0002	376	140	40	21	59	2	18	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/1	a0003	376	36	5	10	17	1	2	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0004	376	4	4	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0005	376	4	0	0	4	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0006	376	3	0	0	0	0	3	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0007	376	2	0	0	2	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0008	376	2	0	2	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0009	376	2	2	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0010	376	1	0	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0011	351	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0012	376	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0013	376	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0014	376	1	0	0	0	1	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	a0015	303	1	0	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE21_chr7_67271941_67294005	1/0	a0001	402	144	60	21	31	12	19	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0002	195	125	2	22	92	0	9	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/1	a0003	402	103	4	18	68	4	8	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0004	402	34	0	7	21	0	6	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0005	402	18	8	4	0	2	4	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0006	402	10	7	3	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0007	402	7	7	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0008	402	6	6	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0009	194	3	0	3	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0010	402	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0011	402	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0012	195	1	0	0	0	0	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0013	402	1	0	1	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0014	402	1	0	0	0	0	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0015	195	1	0	1	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0016	195	1	0	0	1	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	a0017	402	1	0	0	1	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE2B_chr7_102645319_102667625	0/0	a0001	402	57	14	18	19	3	3	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0002	402	26	3	1	15	2	5	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0003	402	25	7	4	7	1	6	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0004	402	6	3	1	2	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625