JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPDYE2B_chr7_102645319_102667625	0/0	a0005	402	4	0	3	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0006	402	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0007	402	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0008	402	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0009	402	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0010	402	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0011	402	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0012	402	1	0	1	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	a0013	402	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2_chr7_102546226_102568538	0/0	a0001	402	73	11	16	29	6	11	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0002	402	27	5	2	17	1	2	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0003	402	21	3	5	8	1	4	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0004	402	9	1	5	2	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0005	402	8	2	2	3	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0006	402	3	0	0	2	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0007	402	3	3	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0008	402	3	0	3	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0009	402	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0010	402	2	0	0	1	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0011	402	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0012	402	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0013	402	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0014	402	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0015	402	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0016	402	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0017	402	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0018	402	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0019	402	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0020	402	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0021	402	1	0	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	a0022	402	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE3_chr7_100302702_100327196	1/1	a0001	549	284	65	46	125	11	35	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0002	476	45	17	12	5	5	6	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0003	403	5	2	2	0	0	1	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0004	549	3	0	0	3	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0005	549	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0006	476	1	0	0	1	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0007	549	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0008	549	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0009	476	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0010	330	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	a0011	275	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE4_chr17_8745853_8763546	1/0	a0001	237	405	95	74	183	14	38	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	a0002	237	5	0	0	5	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/1	a0003	237	5	0	2	0	2	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	a0004	237	2	2	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	a0005	237	1	1	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE5_chr7_75487320_75509316	0/1	a0001	402	176	7	44	94	8	22	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0002	402	87	39	7	41	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	1/0	a0003	402	79	38	16	9	1	14	copy fasta	SPDYE5	chr7	75487320	75509316