JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPDYE5_chr7_75487320_75509316	0/0	a0004	402	24	3	11	1	6	3	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0005	402	15	2	5	3	2	3	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0006	402	9	0	0	9	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0007	402	3	3	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0008	402	2	0	0	2	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0009	402	2	0	0	2	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0010	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0011	402	1	0	0	0	1	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0012	402	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0013	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0014	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0015	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0016	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0017	402	1	0	1	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0018	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0019	402	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	a0020	402	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE6_chr7_102340746_102361444	0/0	a0001	402	181	38	29	83	9	22	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0002	402	112	20	25	53	4	10	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	1/0	a0003	402	75	0	10	52	3	9	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0004	402	18	16	2	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0005	402	18	8	6	0	2	2	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0006	402	7	1	0	5	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0007	402	4	4	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0008	402	4	0	3	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0009	402	4	4	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0010	402	2	0	0	2	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0011	402	2	0	0	0	0	2	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0012	402	2	0	2	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0013	402	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0014	402	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0015	402	1	0	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0016	402	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0017	402	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0018	409	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0019	395	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0020	402	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0021	402	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	a0022	402	1	1	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE8_chr7_73014719_73034766	0/0	a0001	265	119	29	21	47	8	14	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	a0002	265	18	7	3	4	0	4	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	a0003	265	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE9_chr7_73070972_73091038	0/0	a0001	265	86	10	17	48	5	6	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0002	265	67	8	14	36	1	8	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0003	265	6	5	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0004	265	2	0	0	2	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0005	265	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0006	265	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	a0007	39	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPECC1L_chr22_24265831_24422738	0/0	a0001	1117	310	73	50	148	10	29	copy fasta	SPECC1L	chr22	24265831	24422738