JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BAG6_chr6_31634028_31657661	0/0	a0005	1162	1	0	0	0	1	0	copy fasta	BAG6	chr6	31634028	31657661
BAHCC1_chr17_81390457_81471331	0/1	a0001	2608	74	17	14	36	4	2	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0002	2608	73	14	6	43	1	9	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0003	2608	46	6	14	21	0	5	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0004	2608	34	13	13	0	3	5	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0005	2608	14	0	2	8	0	4	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0006	2608	10	2	7	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0007	2608	7	6	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0008	2608	5	1	0	1	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0009	2608	5	0	2	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0010	2608	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0011	2608	3	0	0	0	0	3	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0012	2608	3	0	3	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0013	2608	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0014	2608	3	3	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0015	2608	3	0	3	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0016	2608	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0017	2608	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0018	2608	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0019	2608	2	2	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0020	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0021	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0022	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0023	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0024	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0025	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0026	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0027	2618	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0028	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0029	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0030	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0031	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0032	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0033	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0034	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0035	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0036	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0037	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0038	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0039	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0040	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0041	2608	1	0	0	0	0	1	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0042	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0043	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0044	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0045	2608	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0046	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0047	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0048	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0049	2608	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331