JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPEF2_chr5_35612863_35819611	0/0	a0035	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0036	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0037	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0038	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0039	1822	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0040	1822	1	0	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0041	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0042	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	a0043	1822	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEGNB_chr2_219491131_219503287	1/0	a0001	238	329	85	66	121	12	44	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/1	a0002	88	30	2	6	19	2	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0003	238	6	5	1	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0004	238	6	6	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0005	238	2	2	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0006	238	1	0	0	1	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0007	238	1	0	1	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	a0008	238	1	0	0	1	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEG_chr2_219429843_219498629	1/0	a0001	3267	116	27	25	46	6	11	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0002	3267	72	16	14	22	1	19	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0003	3267	21	0	10	5	2	4	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0004	3267	13	0	2	11	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0005	3267	13	13	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/1	a0006	3267	11	2	4	3	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0007	3267	6	6	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0008	3267	6	6	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0009	3267	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0010	3267	2	0	1	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0011	3267	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0012	3267	2	0	0	2	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0013	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0014	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0015	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0016	3267	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0017	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0018	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0019	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0020	3267	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0021	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0022	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0023	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0024	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0025	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0026	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0027	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0028	3267	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0029	3267	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0030	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0031	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0032	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0033	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629