JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPEG_chr2_219429843_219498629	0/0	a0034	3267	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0035	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0036	3267	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0037	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0038	3267	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0039	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0040	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0041	3267	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0042	3267	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0043	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0044	3267	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0045	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0046	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0047	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0048	3267	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0049	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	a0050	3267	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEM1_chr17_7415324_7426632	1/1	a0001	309	329	68	64	145	13	37	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0002	309	42	9	6	21	3	3	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0003	309	13	12	1	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0004	309	10	1	9	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0005	309	2	2	0	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0006	309	1	0	0	0	0	1	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	a0007	309	1	0	0	0	0	1	copy fasta	SPEM1	chr17	7415324	7426632
SPEM2_chr17_7420616_7432568	1/0	a0001	501	250	40	48	128	7	26	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/1	a0002	501	50	13	17	2	7	10	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0003	501	28	12	5	0	2	9	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0004	501	19	18	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0005	501	6	0	5	0	0	1	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0006	501	4	4	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0007	501	2	0	2	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0008	501	1	0	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0009	501	1	0	0	1	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0010	501	1	1	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0011	501	1	0	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	a0012	501	1	0	0	1	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM3_chr17_7423857_7437820	1/1	a0001	1196	223	38	57	86	11	29	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0002	1196	56	17	12	22	3	2	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0003	1196	17	3	6	1	2	5	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0004	1196	10	9	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0005	1196	9	0	0	9	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0006	1196	7	7	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0007	1196	6	5	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0008	1196	4	0	0	4	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0009	1196	4	0	0	4	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0010	1196	3	3	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0011	1196	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0012	1196	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0013	1196	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0014	1196	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820