JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPEM3_chr17_7423857_7437820	0/0	a0015	1196	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0016	1196	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0017	1196	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0018	1196	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0019	1196	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0020	1196	1	0	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0021	1196	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	a0022	1196	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEN_chr1_15842707_15945456	0/1	a0001	3664	118	51	27	10	11	18	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	1/0	a0002	3664	73	2	13	46	1	10	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0003	3664	65	3	12	46	0	4	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0004	3664	10	7	3	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0005	3664	8	6	2	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0006	3664	3	3	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0007	3664	3	0	0	3	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0008	3664	3	2	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0009	3663	3	0	2	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0010	3664	2	0	0	0	0	2	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0011	3664	2	2	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0012	3664	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0013	3664	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0014	3664	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0015	3664	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0016	3664	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0017	3664	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0018	3664	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0019	3664	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0020	3664	1	0	0	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0021	3664	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0022	3664	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0023	3664	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0024	3664	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	a0025	3664	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPESP1_chr15_68925525_68951811	0/0	a0000	0	2	0	0	2	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	1/0	a0001	350	180	31	29	86	6	27	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/1	a0002	350	156	50	22	63	8	12	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	a0003	350	61	11	3	44	0	3	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	a0004	350	1	0	0	1	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	a0005	350	1	1	0	0	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	a0006	350	1	1	0	0	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPG11_chr15_44557696_44668662	0/0	a0001	2443	73	25	8	29	1	10	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	1/1	a0002	2443	52	19	8	15	3	5	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0003	2443	16	1	0	13	0	2	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0004	2443	12	0	0	12	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0005	2443	7	6	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0006	2443	4	4	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0007	2443	3	3	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0008	2443	3	3	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0009	2443	2	2	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0010	2443	2	2	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662