JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPG11_chr15_44557696_44668662	0/0	a0011	2443	2	0	1	0	1	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0012	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0013	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0014	2443	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0015	2443	1	0	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0016	2443	1	0	0	0	0	1	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0017	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0018	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0019	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0020	2443	1	0	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0021	2443	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0022	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0023	2443	1	0	0	0	1	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0024	2443	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	a0025	2443	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG21_chr15_64958022_64994914	1/1	a0001	308	350	94	58	150	16	30	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	a0002	98	1	0	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	a0003	308	1	0	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG7_chr16_89503403_89562766	1/0	a0001	795	307	80	69	113	12	32	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/1	a0002	795	34	1	4	15	3	10	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0003	795	8	8	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0004	795	2	2	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0005	795	2	1	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0006	795	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0007	795	1	0	1	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0008	795	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0009	795	1	0	0	0	1	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	a0010	795	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPHK1_chr17_76379609_76392855	1/1	a0001	384	398	91	63	180	16	46	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0002	384	2	2	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0003	375	2	0	0	2	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0004	384	2	0	2	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0005	384	2	2	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0006	384	1	0	1	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0007	384	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0008	384	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0009	384	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0010	384	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	a0011	384	1	1	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK2_chr19_48614506_48635405	1/1	a0001	654	378	77	79	170	12	38	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	a0002	654	16	15	1	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	a0003	654	2	0	0	0	2	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	a0004	654	2	2	0	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHKAP_chr2_227974955_228186687	0/1	a0001	1700	71	19	9	36	2	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0002	1700	67	3	16	36	1	11	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0003	1700	55	48	3	0	0	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0004	1700	50	4	17	22	3	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	1/0	a0005	1700	50	11	11	17	3	7	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0006	1700	6	0	4	2	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0007	1700	3	3	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687