JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPHKAP_chr2_227974955_228186687	0/0	a0008	1700	3	0	0	3	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0009	1700	3	0	0	3	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0010	1700	3	0	2	0	1	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0011	1700	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0012	1700	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0013	1700	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0014	1700	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0015	1700	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0016	1700	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0017	1700	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0018	1700	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0019	1700	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0020	1700	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	a0021	1700	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPI1_chr11_47349860_47383547	1/1	a0001	270	387	90	74	163	14	44	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	a0002	270	2	0	0	2	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	a0003	270	1	0	0	1	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPIB_chr19_50413938_50436314	1/0	a0001	262	228	70	26	112	2	17	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/1	a0002	262	159	24	56	30	16	32	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	a0003	262	1	0	0	0	0	1	copy fasta	SPIB	chr19	50413938	50436314
SPICE1_chr3_113437718_113520156	1/0	a0001	855	309	82	52	129	11	34	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0002	855	28	3	0	20	1	4	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/1	a0003	855	13	0	0	12	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0004	855	4	0	4	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0005	855	3	2	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0006	855	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0007	855	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0008	11	1	0	0	1	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0009	855	1	0	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	a0010	855	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPIC_chr12_101470336_101491997	1/1	a0001	248	376	90	67	162	18	37	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	a0002	248	22	6	5	10	0	1	copy fasta	SPIC	chr12	101470336	101491997
SPIDR_chr8_47255938_47741306	1/1	a0001	915	181	43	37	63	4	32	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0002	915	18	18	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0003	915	5	4	1	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0004	915	4	4	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0005	915	2	0	0	0	0	2	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0006	915	2	0	0	0	0	2	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0007	915	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0008	915	1	0	0	1	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0009	915	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	a0010	915	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIN1_chr9_88383444_88483694	1/1	a0001	262	176	82	26	38	10	18	copy fasta	SPIN1	chr9	88383444	88483694
SPIN2A_chrX_57130650_57142397	0/1	a0001	258	311	75	53	147	9	26	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	1/0	a0002	258	14	1	9	1	0	2	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	a0003	258	2	2	0	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	a0004	258	1	0	0	1	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2B_chrX_57114682_57126548	1/1	a0001	258	321	77	61	144	11	26	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	a0002	258	1	1	0	0	0	0	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN3_chrX_56985831_57000541	1/1	a0001	258	317	74	56	150	11	24	copy fasta	SPIN3	chrX	56985831	57000541