JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPIN3_chrX_56985831_57000541	0/0	a0002	111	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN4_chrX_63342228_63356332	1/1	a0001	249	298	78	60	119	11	28	copy fasta	SPIN4	chrX	63342228	63356332
SPINDOC_chr11_63808456_63832716	1/1	a0001	381	382	87	84	150	16	43	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	a0002	381	5	5	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	a0003	381	2	0	0	2	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	a0004	381	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	a0005	381	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	a0006	381	1	0	0	0	0	1	copy fasta	SPINDOC	chr11	63808456	63832716
SPINK13_chr5_148263794_148291255	1/1	a0001	94	375	94	60	175	12	32	copy fasta	SPINK13	chr5	148263794	148291255
SPINK13_chr5_148263794_148291255	0/0	a0002	94	1	0	0	1	0	0	copy fasta	SPINK13	chr5	148263794	148291255
SPINK14_chr5_148163546_148180619	1/0	a0001	97	109	14	16	72	0	6	copy fasta	SPINK14	chr5	148163546	148180619
SPINK1_chr5_147819582_147836671	1/1	a0001	79	404	82	76	187	18	39	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	a0002	79	11	9	2	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	a0003	79	8	0	0	5	0	3	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	a0004	79	3	3	0	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK2_chr4_56804861_56826701	1/1	a0001	134	344	43	69	172	13	45	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	a0002	134	84	49	11	22	1	1	copy fasta	SPINK2	chr4	56804861	56826701
SPINK4_chr9_33235167_33253567	1/1	a0001	86	218	22	49	114	7	24	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	a0002	86	158	64	25	60	1	8	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	a0003	86	1	0	0	1	0	0	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	a0004	86	1	0	0	1	0	0	copy fasta	SPINK4	chr9	33235167	33253567
SPINK5_chr5_148058980_148142382	0/0	a0001	1064	133	13	17	80	7	16	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0002	1064	66	3	6	45	1	11	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	1/1	a0003	1064	52	8	10	22	6	4	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0004	1064	39	0	1	38	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0005	1064	16	15	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0006	1064	15	14	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0007	1064	13	9	2	0	1	1	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0008	1064	12	8	1	3	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0009	1064	5	5	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0010	1063	3	3	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0011	1064	3	3	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0012	1064	3	2	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0013	1064	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0014	1064	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0015	1064	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0016	1064	2	0	2	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0017	1064	2	1	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0018	1064	2	0	2	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0019	1064	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0020	1064	1	0	0	0	1	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0021	1064	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0022	1064	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0023	1064	1	0	0	0	0	1	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0024	1064	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0025	1064	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0026	1064	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0027	1064	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0028	1064	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	a0029	1064	1	0	0	0	0	1	copy fasta	SPINK5	chr5	148058980	148142382