JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPINK5_chr5_148058980_148142382	0/0	a0030	1064	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK6_chr5_148198042_148220137	0/1	a0001	80	279	26	65	143	11	33	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	1/0	a0002	80	158	74	9	68	1	5	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	0/0	a0003	80	1	0	0	1	0	0	copy fasta	SPINK6	chr5	148198042	148220137
SPINK7_chr5_148307423_148320919	1/1	a0001	85	445	93	72	216	14	48	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	a0002	85	3	3	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK8_chr3_48301842_48338661	1/0	a0001	97	202	61	38	78	6	18	copy fasta	SPINK8	chr3	48301842	48338661
SPINK8_chr3_48301842_48338661	0/1	a0002	97	60	5	16	30	2	6	copy fasta	SPINK8	chr3	48301842	48338661
SPINK9_chr5_148330559_148344852	1/1	a0001	86	430	92	72	212	10	42	copy fasta	SPINK9	chr5	148330559	148344852
SPINT1_chr15_40839048_40863207	1/1	a0001	513	294	63	53	126	14	36	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0002	513	25	4	1	20	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0003	513	10	10	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0004	513	7	6	1	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0005	513	7	7	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0006	513	6	0	4	0	2	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0007	513	3	3	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0008	514	3	0	0	1	0	2	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0009	513	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0010	513	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	a0011	513	1	0	1	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT2_chr19_38259573_38297615	1/1	a0001	252	394	85	70	184	15	38	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	a0002	252	4	0	2	0	1	1	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	a0003	252	1	1	0	0	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	a0004	252	1	0	0	0	0	1	copy fasta	SPINT2	chr19	38259573	38297615
SPINT3_chr20_45507461_45520622	1/0	a0001	89	231	32	42	129	9	18	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/1	a0002	89	201	50	41	77	9	23	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	a0003	89	18	11	2	1	0	4	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	a0004	19	1	0	0	1	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	a0005	50	1	1	0	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	a0006	89	1	0	0	0	0	1	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	a0007	15	1	0	1	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT4_chr20_45717347_45730830	1/1	a0001	99	228	28	50	115	10	23	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	a0002	99	217	63	19	110	4	21	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	a0003	99	8	1	5	0	0	2	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	a0004	99	4	4	0	0	0	0	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	a0005	99	1	0	0	1	0	0	copy fasta	SPINT4	chr20	45717347	45730830
SPIRE1_chr18_12441512_12663107	1/1	a0001	756	324	86	69	121	10	36	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	a0002	756	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	a0003	756	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	a0004	756	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	a0005	756	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE2_chr16_89823475_89876319	1/1	a0001	714	292	89	65	84	15	37	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0002	337	23	0	0	20	1	2	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0003	714	12	0	5	1	0	6	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0004	714	12	0	0	11	0	1	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0005	715	5	0	1	4	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0006	714	2	2	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0007	714	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0008	337	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0009	337	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319