JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPIRE2_chr16_89823475_89876319	0/0	a0010	714	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0011	714	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0012	714	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0013	714	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0014	336	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0015	336	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	a0016	344	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPNS1_chr16_28969778_28989543	1/1	a0001	528	387	78	69	181	12	45	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0002	528	5	5	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0003	528	2	0	0	0	2	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0004	528	1	1	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0005	528	1	0	0	0	0	1	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0006	528	1	0	1	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	a0007	528	1	0	0	1	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS2_chr17_4493881_4544035	1/1	a0001	549	403	95	88	158	14	46	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	a0002	549	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS3_chr17_4428940_4493204	1/0	a0001	512	252	88	28	113	6	16	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/1	a0002	512	59	2	28	11	2	15	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0003	512	35	2	9	9	5	10	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0004	512	4	3	1	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0005	512	3	0	2	0	1	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0006	512	2	0	0	0	0	2	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0007	512	2	2	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0008	512	2	0	0	2	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0009	512	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0010	512	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	a0011	512	1	0	0	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPN_chr16_29658247_29675876	1/1	a0001	400	375	79	83	156	13	42	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0002	400	8	7	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0003	400	7	0	0	7	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0004	379	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0005	400	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0006	400	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	a0007	400	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPO11_chr20_57324803_57348993	1/1	a0001	396	310	83	56	119	12	38	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	a0002	396	7	7	0	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	a0003	396	2	2	0	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	a0004	396	2	0	0	2	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	a0005	396	1	0	0	1	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPOCD1_chr1_31785422_31821022	0/0	a0001	1216	90	37	10	27	1	15	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0002	1216	72	11	19	31	3	8	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	1/1	a0003	1216	67	17	11	30	2	5	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0004	1216	4	0	0	4	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0005	1216	4	0	1	2	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0006	1216	3	0	1	0	1	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0007	1216	3	3	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0008	1216	2	0	0	0	0	2	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0009	1216	1	0	0	0	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0010	1216	1	0	1	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0011	1216	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022