JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPOCD1_chr1_31785422_31821022	0/0	a0012	1216	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0013	1216	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0014	1216	1	0	0	0	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0015	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0016	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0017	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0018	1216	1	0	1	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0019	182	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0020	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0021	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0022	1216	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	a0023	1216	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCK1_chr5_136970298_137504326	0/0	a0001	439	151	57	12	60	8	14	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	a0002	439	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK2_chr10_72054034_72093551	1/1	a0001	424	356	85	67	147	12	43	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0002	424	6	0	0	6	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0003	424	5	4	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0004	424	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0005	424	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0006	424	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0007	424	1	0	0	0	0	1	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	a0008	424	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK3_chr4_166728384_167239494	1/1	a0001	433	135	48	32	36	6	11	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	a0002	433	7	7	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	a0003	433	2	1	0	0	0	1	copy fasta	SPOCK3	chr4	166728384	167239494
SPON1_chr11_13957723_14273133	1/1	a0001	807	220	75	38	69	8	28	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	a0002	807	2	0	0	2	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	a0003	807	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	a0004	807	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON2_chr4_1161932_1177583	0/1	a0001	331	235	18	55	125	10	26	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0002	331	120	30	12	65	2	11	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0003	331	38	23	10	0	0	5	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0004	77	17	1	4	10	0	2	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	1/0	a0005	331	16	14	1	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0006	77	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0007	245	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0008	331	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0009	331	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0010	331	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	a0011	331	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPOPL_chr2_138496770_138578547	1/1	a0001	392	370	86	54	182	12	34	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	a0002	392	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	a0003	392	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOP_chr17_49593884_49683097	1/1	a0001	374	390	94	80	162	10	42	copy fasta	SPOP	chr17	49593884	49683097
SPOUT1_chr9_128814651_128834794	0/1	a0001	376	210	15	52	110	12	20	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	a0002	376	128	48	20	41	1	18	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	a0003	376	56	11	3	35	1	6	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	1/0	a0004	376	9	7	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	a0005	376	5	5	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	a0006	376	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794