JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPP1_chr4_87970714_87988411	1/1	a0001	314	406	71	78	195	18	42	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0002	314	13	12	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0003	314	8	7	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0004	314	2	0	2	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0005	180	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0006	314	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0007	314	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0008	314	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0009	314	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0010	314	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	a0011	314	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP2_chr2_234045702_234082134	1/1	a0001	211	407	93	70	188	16	38	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	a0002	211	22	0	0	22	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	a0003	211	2	0	2	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	a0004	211	1	1	0	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	a0005	211	1	0	0	1	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	a0006	211	1	0	0	1	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPPL2A_chr15_50697266_50770706	1/1	a0001	520	321	87	60	131	10	31	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	a0002	520	8	1	3	4	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	a0003	520	4	0	0	4	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	a0004	520	2	0	0	1	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	a0005	520	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2B_chr19_2323684_2360095	1/1	a0001	592	330	52	71	153	14	38	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0002	592	51	43	5	0	0	3	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0003	592	14	1	4	0	1	8	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0004	592	4	0	0	4	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0005	592	4	0	0	3	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0006	592	3	0	0	3	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0007	592	3	0	0	3	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0008	592	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0009	592	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0010	592	1	0	0	0	1	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0011	592	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	a0012	592	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2C_chr17_45839881_45852067	0/0	a0001	684	218	32	42	112	7	25	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/1	a0002	684	71	44	14	9	1	2	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0003	684	33	2	5	21	1	4	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0004	684	22	3	8	1	4	6	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0005	684	8	8	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0006	684	7	0	7	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0007	684	6	0	0	6	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0008	684	4	0	0	4	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0009	684	4	4	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0010	684	2	0	0	2	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0011	684	2	0	0	0	1	1	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0012	684	2	0	2	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0013	684	1	0	0	1	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0014	684	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0015	684	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	a0016	684	1	1	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067