JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPRR2B_chr1_153065226_153076611	0/0	a0002	72	5	0	0	5	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	a0003	72	3	0	0	3	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2D_chr1_153034732_153046120	1/0	a0001	72	325	79	69	120	16	40	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	a0002	72	126	11	13	96	0	6	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	a0003	35	2	0	0	2	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2E_chr1_153088135_153099526	1/1	a0001	72	456	92	86	210	16	50	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2F_chr1_153107121_153118516	1/1	a0001	72	319	72	64	136	11	34	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	a0002	72	94	0	10	76	0	8	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	a0003	72	16	15	1	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	a0004	72	5	5	0	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	a0005	72	2	0	1	0	1	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2G_chr1_153144582_153155890	1/1	a0001	73	409	83	64	202	12	46	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	a0002	73	11	11	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	a0003	73	2	2	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	a0004	73	2	0	0	2	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR3_chr1_152996749_153008856	0/1	a0001	161	241	67	35	109	5	24	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	1/0	a0002	169	155	20	39	68	10	17	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0003	161	9	0	0	9	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0004	169	6	0	0	4	0	2	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0005	161	5	5	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0006	169	2	0	2	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0007	161	1	0	0	0	0	1	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	a0008	161	1	0	0	0	1	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR4_chr1_152965648_152977574	1/1	a0001	79	417	77	82	196	16	44	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	a0002	79	23	17	0	6	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR5_chr1_152942206_152954255	0/0	a0000	0	17	2	4	8	0	3	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	1/0	a0001	108	309	67	56	147	6	32	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/1	a0002	101	84	11	20	30	8	14	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0003	101	8	8	0	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0004	108	5	5	0	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0005	108	5	0	0	5	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0006	115	5	0	0	5	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0007	108	2	1	0	0	0	1	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	a0008	108	1	0	0	1	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRTN_chr1_231333293_231360023	1/1	a0001	489	176	46	23	75	6	24	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0002	489	159	39	29	71	6	14	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0003	489	6	0	0	6	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0004	489	2	0	0	2	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0005	489	2	0	0	1	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0006	489	1	1	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0007	489	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0008	489	1	0	0	0	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0009	489	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0010	489	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0011	489	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	a0012	489	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRY1_chr4_123391795_123408755	1/1	a0001	319	405	91	63	199	14	36	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	a0002	319	2	2	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	a0003	161	1	0	0	1	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	a0004	319	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755