JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPRY1_chr4_123391795_123408755	0/0	a0005	319	1	0	1	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY2_chr13_80330976_80346126	1/0	a0001	315	287	93	40	117	10	26	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/1	a0002	315	133	3	32	73	8	16	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	a0003	315	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	a0004	88	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY3_chrX_155607586_155787459	1/1	a0001	288	228	69	38	89	7	23	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	a0002	288	2	0	0	0	0	2	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	a0003	288	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY4_chr5_142305430_142330021	1/1	a0001	299	371	90	72	153	14	40	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0002	299	2	2	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0003	299	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0004	299	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0005	299	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0006	299	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	a0007	299	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRYD3_chr12_53059316_53084390	1/1	a0001	442	402	96	64	185	10	45	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	a0002	442	1	0	0	0	0	1	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	a0003	442	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD4_chr12_56463578_56484708	1/1	a0001	207	365	86	67	160	16	34	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	a0002	207	5	4	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD7_chr13_49907702_49941340	1/1	a0001	196	380	92	66	156	16	48	copy fasta	SPRYD7	chr13	49907702	49941340
SPR_chr2_72882408_72897158	1/1	a0001	261	328	88	68	114	18	38	copy fasta	SPR	chr2	72882408	72897158
SPSB1_chr1_9287894_9374532	1/1	a0001	273	368	93	70	147	10	46	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	a0002	273	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	a0003	273	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB2_chr12_6865935_6878303	1/1	a0001	263	388	91	66	174	16	39	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	a0002	263	8	0	4	4	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	a0003	263	1	0	0	0	0	1	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	a0004	263	1	1	0	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB3_chr16_1771712_1787571	1/1	a0001	355	430	95	75	195	16	47	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0002	355	2	2	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0003	355	1	0	1	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0004	355	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0005	355	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0006	355	1	0	0	0	0	1	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0007	355	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	a0008	355	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB4_chr3_141046347_141153611	1/1	a0001	273	252	90	46	90	4	20	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	a0002	273	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPTA1_chr1_158605704_158691715	0/1	a0001	2419	123	7	24	70	5	16	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0002	2419	78	5	19	47	3	4	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0003	2419	57	4	11	32	3	7	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0004	2419	9	9	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0005	2419	8	7	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0006	2419	4	3	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0007	2419	4	0	3	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0008	2419	4	4	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0009	2419	3	0	0	3	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0010	2419	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0011	2419	3	0	2	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715