JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPTA1_chr1_158605704_158691715	0/0	a0062	2419	1	0	0	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0063	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0064	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0065	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0066	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0067	2419	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0068	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0069	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0070	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	a0071	2419	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTAN1_chr9_128547587_128638662	1/1	a0001	2477	294	83	38	133	12	26	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	a0002	2477	11	0	0	9	0	2	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	a0003	2477	3	0	0	3	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	a0004	2477	2	0	2	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	a0005	2477	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	a0006	2477	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTBN1_chr2_54451327_54676446	1/1	a0001	2364	351	91	66	142	14	36	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0002	2364	11	0	0	8	0	3	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0003	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0004	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0005	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0006	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0007	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0008	2364	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0009	2364	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	a0010	2364	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN2_chr11_66677497_66734216	0/1	a0001	2390	218	48	38	93	11	27	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0002	2390	84	18	6	54	1	5	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0003	2390	5	5	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	1/0	a0004	2390	3	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0005	2390	2	0	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0006	2390	2	0	0	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0007	2390	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0008	2390	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0009	2390	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0010	2390	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0011	2390	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0012	2390	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0013	2390	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0014	2390	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0015	2390	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0016	2390	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0017	2390	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0018	2390	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0019	2390	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	a0020	2390	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN4_chr19_40462001_40581464	1/1	a0001	2564	114	24	22	47	7	12	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0002	2564	39	17	7	5	4	6	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0003	2564	24	6	9	4	0	5	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0004	2564	21	12	4	0	1	4	copy fasta	SPTBN4	chr19	40462001	40581464