JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPTBN4_chr19_40462001_40581464	0/0	a0005	2564	11	8	1	0	0	2	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0006	2564	3	3	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0007	2564	3	0	1	0	1	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0008	2564	3	3	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0009	2564	2	1	0	0	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0010	2564	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0011	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0012	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0013	2564	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0014	2564	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0015	2564	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0016	2564	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0017	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0018	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0019	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0020	2564	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0021	2564	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0022	2564	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	a0023	2564	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN5_chr15_41843146_41899053	0/0	a0001	3674	53	0	23	21	5	4	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0002	3674	45	0	7	38	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0003	3674	22	21	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0004	3674	20	2	6	2	4	6	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0005	3674	12	0	4	8	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0006	3674	10	10	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0007	3674	10	0	0	8	0	2	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0008	3674	9	0	0	9	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0009	3674	8	7	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0010	3674	8	0	5	1	1	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0011	3674	7	0	0	7	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0012	3674	6	0	0	6	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0013	3674	5	0	0	5	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0014	3674	5	0	4	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0015	3674	5	3	2	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0016	71	4	0	0	4	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	1/0	a0017	3674	4	0	0	1	0	2	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0018	3674	3	0	0	3	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0019	3674	3	0	1	1	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0020	3674	3	0	0	0	0	3	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0021	3674	3	0	0	3	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0022	3674	3	0	0	3	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0023	3674	3	0	3	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0024	3674	3	2	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0025	3674	3	0	0	2	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0026	3674	3	0	0	3	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0027	3674	3	0	0	2	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0028	3674	2	2	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0029	3674	2	2	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0030	3674	2	0	2	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0031	3674	2	0	0	0	0	2	copy fasta	SPTBN5	chr15	41843146	41899053