JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	a0082	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0083	3507	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0084	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0085	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0086	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0087	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0088	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0089	1089	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0090	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0091	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0092	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0093	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0094	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/1	a0095	3674	1	0	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0096	3674	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0097	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0098	3674	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0099	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0100	3674	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0101	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0102	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0103	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0104	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0105	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0106	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0107	3674	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0108	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0109	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0110	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0111	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0112	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0113	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0114	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0115	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0116	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0117	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0118	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0119	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0120	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0121	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0122	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0123	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0124	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0125	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0126	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0127	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0128	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0129	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0130	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0131	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053