JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	a0132	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0133	3674	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0134	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0135	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0136	3674	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0137	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0138	3674	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	a0139	3674	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTB_chr14_64741283_64884907	1/1	a0001	2328	97	20	16	42	6	11	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0002	2328	74	41	7	9	2	15	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0003	2328	20	2	9	4	0	5	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0004	2328	16	3	1	10	0	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0005	2328	12	2	1	6	0	3	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0006	2328	9	7	1	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0007	2328	7	3	4	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0008	2328	4	4	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0009	2328	3	3	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0010	2328	2	0	0	1	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0011	2328	2	1	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0012	2328	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0013	2328	2	0	0	2	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0014	2328	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0015	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0016	2328	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0017	2328	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0018	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0019	2328	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0020	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0021	2328	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0022	2328	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0023	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0024	2328	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0025	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0026	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0027	2328	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0028	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0029	2328	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0030	2328	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	a0031	2328	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTLC1_chr9_92026147_92120413	1/1	a0001	473	356	81	62	167	12	32	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	a0002	473	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	a0003	473	1	0	0	1	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC2_chr14_77500997_77621637	1/1	a0001	562	245	85	60	54	16	28	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	a0002	562	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC3_chr20_13003972_13174103	0/0	a0001	552	217	73	38	77	12	17	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	1/1	a0002	552	62	3	7	44	2	4	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	a0003	552	5	2	2	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	a0004	552	3	0	3	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	a0005	552	2	2	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	a0006	552	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103