JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BAIAP3_chr16_1328645_1354439	0/0	a0014	1152	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0015	1152	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0016	1152	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0017	1152	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAK1_chr6_33567552_33585276	1/1	a0001	211	430	96	78	192	18	44	copy fasta	BAK1	chr6	33567552	33585276
BAK1_chr6_33567552_33585276	0/0	a0002	211	4	0	0	4	0	0	copy fasta	BAK1	chr6	33567552	33585276
BAMBI_chr10_28672521_28687932	1/1	a0001	260	422	98	77	184	16	45	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	a0002	260	12	0	0	12	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	a0003	260	1	0	1	0	0	0	copy fasta	BAMBI	chr10	28672521	28687932
BAMBI_chr10_28672521_28687932	0/0	a0004	260	1	0	0	0	0	1	copy fasta	BAMBI	chr10	28672521	28687932
BANF1_chr11_65997503_66009149	1/1	a0001	89	374	92	56	168	12	44	copy fasta	BANF1	chr11	65997503	66009149
BANF2_chr20_17694966_17740871	0/1	a0001	90	245	44	59	102	13	26	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	a0002	90	141	41	13	66	5	16	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	0/0	a0003	90	7	6	1	0	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANF2_chr20_17694966_17740871	1/0	a0004	90	7	1	1	4	0	0	copy fasta	BANF2	chr20	17694966	17740871
BANK1_chr4_101785730_102079812	0/0	a0001	785	153	45	26	66	0	16	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/1	a0002	785	44	1	17	22	1	2	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0003	785	31	7	7	14	0	3	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0004	785	19	3	4	10	0	2	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0005	785	14	6	3	3	1	1	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0006	785	9	9	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0007	785	7	0	0	7	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0008	785	2	0	0	2	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0009	785	2	1	1	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0010	785	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	0/0	a0011	785	1	1	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANK1_chr4_101785730_102079812	1/0	a0012	785	1	0	0	0	0	0	copy fasta	BANK1	chr4	101785730	102079812
BANP_chr16_87946434_88082316	1/1	a0001	530	296	79	61	121	6	27	copy fasta	BANP	chr16	87946434	88082316
BANP_chr16_87946434_88082316	0/0	a0002	530	56	15	5	15	2	19	copy fasta	BANP	chr16	87946434	88082316
BAP1_chr3_52396008_52415008	1/1	a0001	729	330	74	62	146	10	36	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	a0002	729	12	12	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	a0003	729	4	4	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	a0004	729	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BAP1_chr3_52396008_52415008	0/0	a0005	729	1	1	0	0	0	0	copy fasta	BAP1	chr3	52396008	52415008
BARD1_chr2_214720646_214814683	1/1	a0001	777	164	37	22	81	3	19	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0002	777	89	10	20	43	4	12	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0003	770	23	1	4	13	0	5	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0004	777	17	7	8	0	1	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0005	777	16	8	1	6	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0006	777	8	0	0	8	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0007	777	8	0	7	0	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0008	777	6	5	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0009	777	5	5	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0010	777	5	5	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0011	777	4	3	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0012	777	4	4	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0013	777	2	0	2	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0014	770	2	0	0	1	0	1	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0015	777	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0016	777	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683