JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SQSTM1_chr5_179815905_179843078	0/0	a0003	440	2	0	2	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0004	440	2	1	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0005	440	2	0	2	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0006	440	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0007	440	1	0	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0008	440	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0009	440	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SRA1_chr5_140545068_140562473	1/1	a0001	224	240	73	35	95	13	22	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0002	225	156	18	33	86	5	14	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0003	225	2	2	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0004	224	1	0	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0005	225	1	0	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0006	224	1	1	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	a0007	45	1	0	0	1	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRARP_chr1_15999236_16013807	1/1	a0001	169	393	93	71	168	17	42	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	a0002	169	2	0	1	0	1	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	a0003	169	2	0	0	2	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	a0004	169	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	a0005	169	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	a0006	141	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRBD1_chr2_45383680_45616267	1/1	a0001	995	202	52	42	74	10	22	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0002	995	83	33	12	28	2	8	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0003	995	60	2	9	39	2	8	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0004	995	2	2	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0005	995	2	2	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0006	995	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0007	995	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0008	995	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0009	995	1	0	0	0	0	1	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0010	995	1	0	0	1	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0011	995	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0012	995	1	0	1	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0013	995	1	0	0	0	0	1	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	a0014	995	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRCAP_chr16_30694171_30746409	1/1	a0001	3230	185	60	49	47	12	15	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0002	3230	5	0	5	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0003	3230	3	1	0	0	2	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0004	3230	3	3	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0005	3230	2	0	0	2	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0006	3230	2	0	0	1	0	1	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0007	3230	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0008	3230	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0009	3230	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0010	3230	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0011	3230	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0012	3230	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0013	3230	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	a0014	3230	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCIN1_chr17_38525031_38610952	0/1	a0001	1183	238	70	46	87	3	31	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0002	1183	12	12	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952