JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRCIN1_chr17_38525031_38610952	0/0	a0003	1183	3	2	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0004	1183	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0005	1183	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0006	1183	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0007	1183	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0008	1183	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0009	1183	1	0	0	0	1	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0010	1183	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	a0011	1183	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRC_chr20_37341140_37411050	1/1	a0001	536	282	96	50	96	10	28	copy fasta	SRC	chr20	37341140	37411050
SRD5A1_chr5_6628440_6679386	1/1	a0001	259	401	93	66	184	14	42	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	a0002	259	4	0	4	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	a0003	259	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A2_chr2_31517480_31585938	0/1	a0001	254	260	76	52	103	8	20	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	1/0	a0002	254	118	17	19	66	4	11	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	a0003	254	3	3	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	a0004	254	3	0	3	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	a0005	233	1	0	0	0	0	1	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	a0006	254	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A3_chr4_55341242_55378100	1/1	a0001	318	375	89	71	153	16	44	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	a0002	318	5	4	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	a0003	318	2	2	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	a0004	318	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	a0005	318	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SREBF1_chr17_17806334_17841986	1/1	a0001	1147	320	80	76	116	16	30	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0002	1147	5	5	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0003	1147	4	4	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0004	1147	3	0	0	2	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0005	1147	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0006	1147	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0007	1147	2	0	0	2	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0008	1147	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0009	1147	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0010	1147	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0011	1147	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0012	1147	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0013	1147	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0014	1147	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0015	1147	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0016	1147	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0017	1147	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0018	1147	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0019	1147	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	a0020	1147	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF2_chr22_41828105_41912305	1/0	a0001	1141	158	21	29	78	11	18	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0002	1141	136	51	26	42	1	16	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/1	a0003	1141	18	2	4	7	1	3	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0004	1141	10	10	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0005	1141	7	0	1	5	1	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	a0006	1149	3	3	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305