JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRP14_chr15_40030690_40044181	0/0	a0004	132	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	a0005	140	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	a0006	129	1	0	0	0	0	1	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	a0007	136	1	0	0	1	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP19_chr5_112856287_112874788	1/1	a0001	144	407	95	70	184	12	44	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	a0002	144	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP54_chr14_34977992_35034567	1/1	a0001	504	395	82	80	171	14	46	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	a0002	504	1	0	0	1	0	0	copy fasta	SRP54	chr14	34977992	35034567
SRP68_chr17_76033785_76077517	1/0	a0001	627	350	85	66	153	13	32	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0002	631	3	3	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0003	627	2	2	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0004	627	2	1	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0005	621	2	1	0	0	1	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0006	633	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0007	633	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0008	627	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0009	627	1	0	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0010	623	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	a0011	620	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP72_chr4_56462617_56508681	1/1	a0001	671	373	89	56	175	18	33	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	a0002	671	6	0	6	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	a0003	671	5	0	0	5	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	a0004	671	2	2	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	a0005	671	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	a0006	671	1	0	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP9_chr1_225772826_225795464	1/1	a0001	86	474	96	84	236	14	42	copy fasta	SRP9	chr1	225772826	225795464
SRPK1_chr6_35827966_35926098	1/1	a0001	655	337	88	62	135	12	38	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	a0002	655	2	0	0	2	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	a0003	655	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	a0004	655	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	a0005	655	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK2_chr7_105111374_105393921	1/1	a0001	699	279	86	65	94	7	25	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	a0002	699	1	0	0	0	1	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	a0003	699	1	0	0	0	0	1	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	a0004	699	1	0	1	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK3_chrX_153776041_153790730	1/1	a0001	567	286	70	53	118	11	32	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0002	567	5	5	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0003	459	2	0	1	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0004	567	2	0	0	2	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0005	567	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0006	33	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0007	567	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0008	249	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0009	261	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0010	261	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0011	342	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0012	567	1	1	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0013	342	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0014	270	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	a0015	260	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730