JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRRM2_chr16_2747638_2776412	0/0	a0012	2752	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0013	2752	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0014	2752	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0015	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0016	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0017	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0018	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0019	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0020	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0021	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0022	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0023	2752	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0024	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0025	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0026	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0027	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0028	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0029	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0030	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0031	2752	1	0	0	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0032	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0033	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0034	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0035	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0036	2752	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0037	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0038	2752	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0039	2752	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0040	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0041	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0042	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0043	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0044	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0045	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0046	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0047	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0048	2752	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0049	2752	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0050	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0051	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0052	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0053	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0054	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0055	2752	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	a0056	2752	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM3_chr7_76196896_76292287	1/1	a0001	653	251	60	48	93	14	34	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0002	653	52	16	7	25	0	4	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0003	653	7	7	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0004	653	3	0	3	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0005	653	3	0	0	3	0	0	copy fasta	SRRM3	chr7	76196896	76292287