JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SRRM3_chr7_76196896_76292287	0/0	a0006	653	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0007	653	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0008	653	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0009	653	1	0	0	0	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0010	653	1	0	0	0	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	a0011	653	1	0	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM4_chr12_118976541_119168051	1/1	a0001	611	215	39	32	104	5	33	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0002	611	56	9	12	23	8	4	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0003	611	28	10	8	8	0	2	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0004	611	7	7	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0005	611	6	0	0	6	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0006	611	5	4	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0007	611	2	0	1	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0008	611	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0009	611	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0010	611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0011	611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0012	611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0013	611	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0014	611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	a0015	611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM5_chr19_43607088_43619498	1/0	a0001	715	203	39	37	96	5	25	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0002	715	87	5	19	54	3	6	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0003	715	75	19	14	25	6	11	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0004	715	7	7	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0005	715	7	6	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0006	715	7	5	2	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/1	a0007	715	5	0	2	0	0	2	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0008	715	5	5	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0009	715	3	0	0	3	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0010	715	2	0	0	2	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0011	715	2	0	1	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0012	715	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0013	715	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0014	715	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0015	510	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0016	715	1	0	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0017	570	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0018	715	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0019	703	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0020	703	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0021	715	1	0	0	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0022	470	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0023	703	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	a0024	710	1	0	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRT_chr7_100870103_100893664	1/1	a0001	876	418	95	70	185	18	48	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	a0002	876	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	a0003	876	1	0	0	1	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRR_chr17_2298950_2330260	1/1	a0001	340	368	92	70	148	12	44	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	a0002	346	1	0	0	1	0	0	copy fasta	SRR	chr17	2298950	2330260