JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSBP1_chr7_141733358_141755488	0/0	a0003	148	1	0	0	1	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP1_chr7_141733358_141755488	0/0	a0004	148	1	1	0	0	0	0	copy fasta	SSBP1	chr7	141733358	141755488
SSBP2_chr5_81407804_81756097	1/1	a0001	369	206	86	46	46	8	18	copy fasta	SSBP2	chr5	81407804	81756097
SSBP3_chr1_54220432_54411394	1/1	a0001	388	278	88	52	86	12	38	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	a0002	388	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	a0003	388	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP4_chr19_18414398_18439562	1/1	a0001	385	297	96	70	82	11	36	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	a0002	385	2	2	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	a0003	385	1	0	0	0	1	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	a0004	385	1	0	0	1	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	a0005	385	1	0	0	1	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSB_chr2_169793871_169817064	1/1	a0001	408	422	93	74	193	14	46	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	a0002	408	2	2	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	a0003	408	1	1	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	a0004	408	1	0	0	1	0	0	copy fasta	SSB	chr2	169793871	169817064
SSC4D_chr7_76384337_76414697	1/1	a0001	575	223	48	44	83	14	32	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0002	575	67	3	14	39	1	10	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0003	575	49	15	7	25	1	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0004	575	27	25	2	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0005	575	6	0	0	6	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0006	575	5	0	0	5	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0007	575	3	3	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0008	575	2	2	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0009	575	1	0	1	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0010	575	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0011	575	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0012	575	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0013	575	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	a0014	575	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC5D_chr19_55483436_55524099	0/0	a0001	1574	92	13	10	55	0	14	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/1	a0002	1573	83	22	26	14	6	14	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0003	1573	45	3	11	18	5	8	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0004	1605	32	0	1	31	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0005	1545	29	4	16	9	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	1/0	a0006	1573	20	0	0	18	0	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0007	1573	13	0	0	13	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0008	1572	9	9	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0009	1592	8	0	7	0	1	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0010	1570	5	5	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0011	1573	5	0	4	0	1	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0012	1573	4	0	0	4	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0013	1570	3	2	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0014	1573	3	1	1	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0015	1613	3	3	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0016	1573	3	3	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0017	1574	3	0	0	0	3	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0018	1574	3	3	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0019	1570	2	1	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0020	1545	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0021	1573	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099