JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BARD1_chr2_214720646_214814683	0/0	a0017	777	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0018	777	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0019	777	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0020	777	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0021	770	1	0	1	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0022	777	1	1	0	0	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARD1_chr2_214720646_214814683	0/0	a0023	777	1	0	0	1	0	0	copy fasta	BARD1	chr2	214720646	214814683
BARHL1_chr9_132577606_132595252	1/1	a0001	327	472	98	86	220	18	48	copy fasta	BARHL1	chr9	132577606	132595252
BARHL2_chr1_90706539_90722302	1/1	a0001	387	442	95	74	212	18	41	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	a0002	387	1	0	0	0	0	1	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	a0003	387	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	a0004	387	1	1	0	0	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARHL2_chr1_90706539_90722302	0/0	a0005	387	1	0	0	1	0	0	copy fasta	BARHL2	chr1	90706539	90722302
BARX1_chr9_93946627_93960355	1/0	a0001	254	360	87	64	160	13	35	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/1	a0002	254	42	2	9	17	3	10	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	a0003	254	4	2	0	1	0	1	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	a0004	254	1	1	0	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX1_chr9_93946627_93960355	0/0	a0005	254	1	0	1	0	0	0	copy fasta	BARX1	chr9	93946627	93960355
BARX2_chr11_129370848_129457279	1/1	a0001	279	389	87	69	179	14	38	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	a0002	279	10	9	1	0	0	0	copy fasta	BARX2	chr11	129370848	129457279
BARX2_chr11_129370848_129457279	0/0	a0003	279	1	0	0	1	0	0	copy fasta	BARX2	chr11	129370848	129457279
BASP1_chr5_17212631_17281834	1/1	a0001	227	361	93	68	143	16	39	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	a0002	227	4	3	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	a0003	227	3	0	0	2	0	1	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	a0004	227	1	0	1	0	0	0	copy fasta	BASP1	chr5	17212631	17281834
BASP1_chr5_17212631_17281834	0/0	a0005	227	1	0	0	1	0	0	copy fasta	BASP1	chr5	17212631	17281834
BATF2_chr11_64982945_65001971	1/1	a0001	274	395	92	63	184	17	37	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	a0002	274	4	0	3	0	1	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	a0003	274	2	0	0	0	0	2	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	a0004	274	1	0	0	0	0	1	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	a0005	274	1	0	0	1	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF2_chr11_64982945_65001971	0/0	a0006	274	1	0	0	1	0	0	copy fasta	BATF2	chr11	64982945	65001971
BATF3_chr1_212681417_212704840	1/1	a0001	127	383	68	73	195	17	28	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	a0002	127	74	23	9	27	1	14	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	a0003	129	3	3	0	0	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	a0004	50	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF3_chr1_212681417_212704840	0/0	a0005	127	1	0	0	1	0	0	copy fasta	BATF3	chr1	212681417	212704840
BATF_chr14_75517469_75551992	1/1	a0001	125	376	90	74	158	16	36	copy fasta	BATF	chr14	75517469	75551992
BAX_chr19_48949875_48966798	1/1	a0001	192	416	95	78	185	16	40	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	a0002	192	1	0	0	1	0	0	copy fasta	BAX	chr19	48949875	48966798
BAX_chr19_48949875_48966798	0/0	a0003	192	1	1	0	0	0	0	copy fasta	BAX	chr19	48949875	48966798
BAZ1A_chr14_34747731_34880360	1/1	a0001	1556	369	80	74	158	15	40	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	a0002	1556	7	1	2	0	1	3	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	a0003	1556	1	0	0	0	0	1	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	a0004	1556	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	a0005	1556	1	0	0	1	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1A_chr14_34747731_34880360	0/0	a0006	1556	1	1	0	0	0	0	copy fasta	BAZ1A	chr14	34747731	34880360
BAZ1B_chr7_73435406_73527293	1/1	a0001	1483	198	59	42	55	12	28	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	a0002	1483	1	1	0	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	a0003	1483	1	0	0	1	0	0	copy fasta	BAZ1B	chr7	73435406	73527293