JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSC5D_chr19_55483436_55524099	0/0	a0022	1573	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0023	1570	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0024	1532	2	0	2	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0025	1573	2	0	0	2	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0026	1554	2	0	0	2	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0027	1551	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0028	1573	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0029	1573	2	2	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0030	1573	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0031	1573	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0032	1573	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0033	1573	1	0	0	0	0	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0034	1570	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0035	1545	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0036	1570	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0037	1630	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0038	1574	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0039	1574	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0040	1570	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0041	1554	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0042	1605	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0043	1574	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0044	1551	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0045	1545	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0046	1573	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0047	1533	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0048	1573	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0049	1573	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0050	1574	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0051	1574	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0052	1605	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0053	1573	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0054	1605	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0055	1573	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	a0056	1573	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSH1_chr12_108773191_108862583	1/1	a0001	1049	314	77	65	120	9	41	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0002	1049	4	4	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0003	1049	4	0	0	4	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0004	1049	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0005	1049	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0006	1049	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0007	1049	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0008	1049	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0009	1049	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0010	1049	1	0	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0011	1049	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	a0012	1049	1	0	0	0	1	0	copy fasta	SSH1	chr12	108773191	108862583
SSH2_chr17_29620938_29935228	1/0	a0001	1450	166	62	30	42	4	27	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/1	a0002	1450	44	7	17	5	6	8	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0003	1450	4	0	2	0	2	0	copy fasta	SSH2	chr17	29620938	29935228