JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSH2_chr17_29620938_29935228	0/0	a0004	1450	3	0	3	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0005	1450	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0006	1450	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0007	1450	2	0	0	1	0	1	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0008	1450	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0009	1450	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0010	1450	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0011	1450	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0012	1450	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0013	1450	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0014	1450	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0015	1450	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	a0016	1450	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH3_chr11_67298530_67317592	1/1	a0001	659	290	73	41	127	14	33	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0002	659	27	9	16	2	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0003	659	6	1	5	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0004	659	4	4	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0005	659	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0006	659	1	0	0	1	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0007	659	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0008	659	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	a0009	659	1	0	0	0	0	1	copy fasta	SSH3	chr11	67298530	67317592
SSMEM1_chr7_130202860_130221844	1/1	a0001	244	308	60	72	128	10	36	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0002	244	51	29	11	0	4	7	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0003	244	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0004	127	1	0	0	1	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0005	244	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0006	244	1	0	0	1	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0007	244	1	0	1	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0008	244	1	0	0	0	0	1	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	a0009	244	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSNA1_chr9_137183676_137195366	1/1	a0001	119	388	94	76	162	12	42	copy fasta	SSNA1	chr9	137183676	137195366
SSPN_chr12_26190573_26239777	1/1	a0001	243	348	66	63	163	14	40	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0002	243	28	24	4	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0003	243	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0004	243	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0005	243	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0006	217	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	a0007	243	1	0	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSR1_chr6_7276143_7318199	1/1	a0001	286	303	41	62	156	11	31	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	a0002	286	121	45	12	50	4	10	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	a0003	286	7	2	4	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	a0004	286	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	a0005	286	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	a0006	286	1	0	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR2_chr1_156004048_156025951	1/1	a0001	183	356	92	66	134	16	46	copy fasta	SSR2	chr1	156004048	156025951
SSR3_chr3_156534553_156560117	1/1	a0001	185	400	92	60	186	16	44	copy fasta	SSR3	chr3	156534553	156560117
SSR4_chrX_153789668_153803499	1/1	a0001	173	309	80	54	132	9	32	copy fasta	SSR4	chrX	153789668	153803499
SSRP1_chr11_57320988_57340892	1/1	a0001	709	368	97	72	135	18	44	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	a0002	709	1	0	0	1	0	0	copy fasta	SSRP1	chr11	57320988	57340892