JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSRP1_chr11_57320988_57340892	0/0	a0003	709	1	1	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSTR1_chr14_38202904_38218067	0/0	a0000	0	6	2	0	4	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	1/0	a0001	391	446	94	82	207	16	46	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	a0002	391	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/1	a0003	391	1	0	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	a0004	391	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	a0005	391	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR2_chr17_73160010_73181633	1/1	a0001	369	452	93	83	210	18	46	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	a0002	369	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	a0003	369	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR3_chr22_37199237_37217477	1/1	a0001	418	361	66	63	173	16	41	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0002	418	25	21	3	0	1	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0003	418	18	0	11	1	1	5	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0004	418	3	3	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0005	418	2	2	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0006	418	2	0	0	2	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0007	418	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0008	418	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0009	418	1	0	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0010	418	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	a0011	418	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR4_chr20_23030312_23044237	1/1	a0001	388	201	47	42	87	9	14	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	a0002	388	117	20	17	51	8	21	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	a0003	388	116	27	15	67	0	7	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	a0004	388	2	0	0	2	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	a0005	388	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	a0006	388	1	0	0	0	1	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR5_chr16_1067747_1086454	0/1	a0001	364	199	31	34	107	13	13	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	1/0	a0002	364	107	35	28	16	5	22	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0003	364	23	16	3	1	0	3	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0004	364	6	0	0	6	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0005	364	5	0	0	5	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0006	364	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0007	364	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0008	364	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0009	364	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0010	364	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0011	364	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0012	364	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	a0013	364	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SST_chr3_187663912_187675394	1/1	a0001	116	417	96	80	178	18	43	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	a0002	116	2	0	1	0	0	1	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	a0003	116	1	0	1	0	0	0	copy fasta	SST	chr3	187663912	187675394
SSU72L1_chr11_4333245_4344345	1/0	a0001	194	307	32	54	176	12	32	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0002	194	13	4	4	0	0	5	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0003	194	5	5	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0004	194	4	0	0	0	0	4	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0005	194	3	0	3	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0006	194	2	0	0	1	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0007	194	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345