JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSU72L1_chr11_4333245_4344345	0/0	a0008	194	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0009	194	1	0	1	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0010	194	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0011	194	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0012	194	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	a0013	194	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L2_chr11_4236641_4247706	1/0	a0001	194	180	42	31	92	2	12	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/1	a0002	194	95	2	32	37	7	16	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0003	194	47	4	4	30	3	6	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0004	194	9	8	0	1	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0005	194	8	7	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0006	194	5	0	0	5	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0007	194	5	5	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0008	194	4	1	2	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0009	194	3	2	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0010	194	3	3	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0011	194	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0012	194	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0013	194	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0014	194	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	a0015	194	1	0	0	1	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L3_chr11_4324790_4335864	1/0	a0001	194	180	27	33	93	5	21	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0002	194	113	12	27	57	4	13	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/1	a0003	194	11	0	7	0	1	2	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0004	194	11	0	0	11	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0005	194	7	0	0	7	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0006	194	5	0	2	0	2	1	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0007	194	5	1	0	3	0	1	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0008	194	2	1	1	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0009	11	2	2	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0010	194	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0011	194	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0012	194	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	a0013	194	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L4_chr11_4282084_4293185	0/0	a0000	0	1	0	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0001	194	258	71	44	107	7	29	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0002	194	42	5	15	14	3	5	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0003	194	7	0	5	0	2	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0004	194	6	6	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0005	194	2	1	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0006	194	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	a0007	194	1	0	0	1	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L5_chr11_4228217_4239287	0/1	a0001	194	146	27	36	52	7	23	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0002	194	100	10	16	67	1	6	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0003	194	47	5	5	30	3	4	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0004	194	44	26	12	4	1	1	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0005	194	8	7	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0006	194	2	2	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	1/0	a0007	194	2	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	a0008	194	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287