JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SSX4B_chrX_48397082_48416960	0/0	a0002	188	2	1	1	0	0	0	copy fasta	SSX4B	chrX	48397082	48416960
SSX4_chrX_48378539_48398347	0/0	a0001	188	93	31	16	28	3	15	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	a0002	188	8	1	1	5	1	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	a0003	49	1	0	0	1	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	a0004	122	1	0	1	0	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX4_chrX_48378539_48398347	0/0	a0005	39	1	0	0	1	0	0	copy fasta	SSX4	chrX	48378539	48398347
SSX5_chrX_48181220_48201795	0/1	a0001	188	274	39	51	143	8	32	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	1/0	a0002	188	47	31	7	8	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	a0003	104	1	0	1	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	a0004	188	1	1	0	0	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	a0005	174	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	a0006	188	1	0	0	0	1	0	copy fasta	SSX5	chrX	48181220	48201795
SSX5_chrX_48181220_48201795	0/0	a0007	188	1	0	0	1	0	0	copy fasta	SSX5	chrX	48181220	48201795
SSX7_chrX_52639061_52659900	1/1	a0001	188	277	73	49	118	11	24	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0002	188	16	0	5	7	2	2	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0003	188	5	0	4	0	0	1	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0004	188	2	0	0	0	0	2	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0005	98	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0006	188	1	1	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0007	98	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0008	188	1	0	1	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	a0009	188	1	0	0	0	0	1	copy fasta	SSX7	chrX	52639061	52659900
ST13_chr22_40819535_40861639	0/0	a0000	0	1	1	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	1/1	a0001	369	327	81	49	143	15	37	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	a0002	369	8	8	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	a0003	369	7	0	3	0	1	3	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	a0004	369	1	0	0	1	0	0	copy fasta	ST13	chr22	40819535	40861639
ST14_chr11_130154782_130215362	1/1	a0001	855	221	43	42	98	11	25	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0002	855	29	27	2	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0003	855	13	0	10	1	1	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0004	855	12	11	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0005	855	6	5	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0006	855	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0007	855	2	1	0	0	0	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0008	855	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0009	855	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0010	855	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0011	855	1	0	0	0	0	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0012	855	1	0	0	1	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	a0013	855	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST18_chr8_52105838_52414756	1/1	a0001	1047	96	60	12	18	0	4	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	a0002	1047	3	3	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	a0003	1047	2	2	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	a0004	1047	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	a0005	1047	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	a0006	1047	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST3GAL1_chr8_133449848_133576887	1/1	a0001	340	308	78	54	114	16	44	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	a0002	340	9	7	2	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	a0003	340	8	7	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	a0004	340	3	2	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887