Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	6759
ensemblid	ENSG00000268009.6
hgncid	11338
symbol	SSX4
name	SSX family member 4
refseq_nuc	NM_005636.4
refseq_prot	NP_005627.1
ensembl_nuc	ENST00000595689.3
ensembl_prot	ENSP00000469011.1
mane_status	MANE Select
chr	chrX
start	48383539
end	48393347
strand	+
ver	v1.2
region	chrX:48383539-48393347
region5000	chrX:48378539-48398347
regionname0	SSX4_chrX_48383539_48393347
regionname5000	SSX4_chrX_48378539_48398347

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	188	96	31	17	30	3	15	17	SSX4_chrX_48378539_48398347	SSX4	MNGDD others(183): Show MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVY MKLNYEVMTKLGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMT FGSLQRIFPKIMPKKPAEEENGLKEVPEASGPQNDGKQLCPPGNPSTLEK INKTSGPKRGKHAWTHRLRERKQLVVYEEISDPEEDDE	chrX	48378539	48398347
a0002	0/0	188	8	1	1	5	1	0	5	SSX4_chrX_48378539_48398347	SSX4	MNGDD others(183): Show MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVY MKLNYEVMTKLGFKVTLPPFMHSKRAADFHGNDFGNDRNHRNQVERPQMT FGSLQRIFPKIMPKKPAEEENGLKEVPEASGPQNDGKQLCPPGNPSTLEK INKTSGPKRGKHAWTHRLRERKQLVVYEEISDPEEDDE	chrX	48378539	48398347

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		564	96	31	17	30	3	15	SSX4_chrX_48378539_48398347	SSX4		ATGAA others(559): Show ATGAACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAAT ATCAGAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTA AGAAAGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTAT ATGAAGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCT CCCACCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATT TTGGTAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACT TTCGGCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGC AGAGGAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAA ATGATGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAG ATTAACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAG ACTGCGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTG AGGAAGATGACGAG	chrX	48378539	48398347
a0002c0002	0/0		564	8	1	1	5	1	0	SSX4_chrX_48378539_48398347	SSX4		ATGAA others(559): Show ATGAACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAAT ATCAGAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTA AGAAAGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTAT ATGAAGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCT CCCACCTTTCATGCATAGTAAACGGGCTGCAGACTTCCACGGGAATGATT TTGGTAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACT TTCGGCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGC AGAGGAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAA ATGATGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAG ATTAACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAG ACTGCGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTG AGGAAGATGACGAG	chrX	48378539	48398347

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1209	55	11	11	23	1	9	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCTCCATTGCCATGC GACCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347
a0001c0001t0002	0/0	1209	33	14	6	5	2	6	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCTCCATTGCCATGC GTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347
a0001c0001t0003	0/0	1209	4	4	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGCTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCTCCATTGCCATGC GTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347
a0001c0001t0004	0/0	1209	2	0	0	2	0	0	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCATCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCTCCATTGCCATGC GTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347
a0001c0001t0005	0/0	1209	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCCCCATTGCCATGC GTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347
a0002c0002t0002	0/0	1209	8	1	1	5	1	0	SSX4_chrX_48378539_48398347	SSX4	GCCCT others(1204): Show GCCCTTTTGATTCTTCCACAATCAGGGTGAGACTGCTCCCAGTGCCATGA ACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCA GAGAAGTTACGAAAGGCCTTCGATGATATTGCCAAATACTTCTCTAAGAA AGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGTCTATGTGTATATGA AGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCA CCTTTCATGCATAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGG TAACGATCGAAACCACAGGAATCAGGTTGAACGTCCTCAGATGACTTTCG GCAGCCTCCAGAGAATCTTCCCGAAGATCATGCCCAAGAAGCCAGCAGAG GAAGAAAATGGTTTGAAGGAAGTGCCAGAGGCATCTGGCCCACAAAATGA TGGGAAACAGCTGTGCCCCCCGGGAAATCCAAGTACCTTGGAGAAGATTA ACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGACTG CGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGA AGATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGATGAGAA GCAGAACGTGGTGACCTTTCACGAACATGGGCATGGCTGCGGACCCCTCG TCATCAGGTGCATAGCAAGTGAAAGCAAGTGTTCACAACAGTGAAAAGTT GAGCGTCATTTTTCTTAGTGTGCCAAGAGTTCGATGTTGGCGTTTCCGCT GTATTTTCTTGCAGTGTGCCATTCTGTTAGACATTAGCGTTTTCGTTGAT GAGCAAGACATGCTTAATGCATATTTCGGCTTGTGTATCCATGCACCTAC CTCAGAAAACAAGTATTGTCAGGTATTCTCTCCATAGAACAGCACTACCC TCCTCTCTCCCCAGATGTGACTACTGAGGGGAGGTCTGAGTGTTTAATTT CCGATTTTTTCCTCTGCATTTACACACACACCACACACGCACACACACAC ACCAAGTACCAGTATAAGCATCTCCCATCTGCTTTTCTCCATTGCCATGC GTCCTGGTCAAGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCC TCATCCGATTCCGTTGTATCAGTCACTGACAGTTAATAAACCTTTGCAAA CGTTCCCCA	chrX	48378539	48398347

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	10	3	2	5	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0002	0/0	10	0	3	4	1	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0005	0/0	6	1	0	4	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0006	0/0	5	0	1	3	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0008	0/0	4	0	0	1	0	3	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0010	0/0	3	1	1	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0013	0/0	2	1	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0033	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0036	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0037	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0038	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0039	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0043	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0044	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0045	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0046	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0047	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0048	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0049	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0003	0/0	4	0	1	1	0	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0004	0/0	7	3	1	2	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0007	0/0	4	2	1	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0009	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0011	0/0	2	0	0	0	1	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0012	0/0	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0015	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0017	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0019	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0020	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0021	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0022	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0023	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0026	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0027	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0029	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0030	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0031	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0034	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0014	0/0	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0018	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0028	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0004g0004	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0004g0016	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0005g0041	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0005g0042	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0003	0/0	4	0	1	3	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0009	0/0	2	1	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0024	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0025	0/0	1	0	0	0	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0002	g0011	EUR	GBR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00621	hp1	a0001	c0001	t0001	g0006	EAS	CHS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00642	hp1	a0001	c0001	t0001	g0046	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00673	hp1	a0001	c0001	t0001	g0002	EAS	CHS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00735	hp1	a0001	c0001	t0002	g0029	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00735	hp2	a0001	c0001	t0001	g0044	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01074	hp1	a0001	c0001	t0002	g0003	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01081	hp1	a0001	c0001	t0002	g0004	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01081	hp2	a0001	c0001	t0001	g0006	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01109	hp1	a0001	c0001	t0001	g0002	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01256	hp1	a0001	c0001	t0001	g0002	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01358	hp1	a0001	c0001	t0002	g0007	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01433	hp1	a0001	c0001	t0002	g0009	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01516	hp1	a0002	c0002	t0002	g0025	EUR	IBS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01516	hp2	a0001	c0001	t0001	g0002	EUR	IBS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01884	hp1	a0001	c0001	t0001	g0032	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01884	hp2	a0001	c0001	t0002	g0021	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01943	hp1	a0001	c0001	t0002	g0027	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01978	hp1	a0001	c0001	t0001	g0045	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01978	hp2	a0001	c0001	t0001	g0033	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01981	hp1	a0002	c0002	t0002	g0003	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01981	hp2	a0001	c0001	t0001	g0010	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02027	hp1	a0001	c0001	t0002	g0015	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02040	hp1	a0001	c0001	t0001	g0005	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02074	hp1	a0001	c0001	t0002	g0003	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02080	hp1	a0001	c0001	t0001	g0005	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02080	hp2	a0001	c0001	t0002	g0019	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02083	hp1	a0001	c0001	t0001	g0010	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02129	hp1	a0001	c0001	t0001	g0008	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02132	hp1	a0001	c0001	t0001	g0035	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02145	hp1	a0001	c0001	t0001	g0010	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02451	hp1	a0001	c0001	t0002	g0022	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02451	hp2	a0001	c0001	t0003	g0014	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02615	hp1	a0001	c0001	t0001	g0038	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02615	hp2	a0001	c0001	t0001	g0013	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02630	hp1	a0001	c0001	t0001	g0037	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02630	hp2	a0001	c0001	t0002	g0030	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02683	hp1	a0001	c0001	t0001	g0008	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02698	hp1	a0001	c0001	t0002	g0003	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02717	hp1	a0001	c0001	t0002	g0007	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02735	hp1	a0001	c0001	t0001	g0005	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02809	hp1	a0001	c0001	t0002	g0023	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02809	hp2	a0001	c0001	t0001	g0039	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02897	hp1	a0001	c0001	t0002	g0004	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02897	hp2	a0001	c0001	t0002	g0004	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02922	hp2	a0001	c0001	t0002	g0004	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03017	hp1	a0001	c0001	t0002	g0026	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03130	hp1	a0001	c0001	t0001	g0049	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03209	hp2	a0001	c0001	t0003	g0014	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03225	hp1	a0001	c0001	t0001	g0005	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03239	hp1	a0001	c0001	t0002	g0034	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03239	hp2	a0001	c0001	t0002	g0011	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03453	hp1	a0001	c0001	t0003	g0018	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03453	hp2	a0001	c0001	t0002	g0007	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03492	hp1	a0001	c0001	t0001	g0008	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03516	hp1	a0001	c0001	t0002	g0017	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03516	hp2	a0001	c0001	t0002	g0020	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03579	hp1	a0001	c0001	t0003	g0028	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03688	hp1	a0001	c0001	t0001	g0043	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03942	hp1	a0001	c0001	t0001	g0002	SAS	BEB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04115	hp1	a0001	c0001	t0001	g0047	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04199	hp1	a0001	c0001	t0002	g0007	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04204	hp1	a0001	c0001	t0002	g0003	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04228	hp1	a0001	c0001	t0001	g0008	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18747	hp1	a0001	c0001	t0002	g0004	EAS	CHB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18906	hp1	a0001	c0001	t0002	g0012	AFR	YRI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18906	hp2	a0001	c0001	t0005	g0042	AFR	YRI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18943	hp1	a0001	c0001	t0001	g0040	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18944	hp1	a0001	c0001	t0002	g0004	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18945	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18953	hp1	a0001	c0001	t0001	g0048	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18962	hp1	a0001	c0001	t0004	g0016	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18966	hp1	a0001	c0001	t0001	g0013	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18970	hp1	a0001	c0001	t0001	g0006	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18977	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18982	hp1	a0002	c0002	t0002	g0003	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18983	hp1	a0001	c0001	t0001	g0005	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18986	hp1	a0001	c0001	t0004	g0004	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18994	hp1	a0002	c0002	t0002	g0024	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18999	hp2	a0002	c0002	t0002	g0009	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19004	hp1	a0001	c0001	t0001	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19043	hp2	a0001	c0001	t0005	g0041	AFR	LWK	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19056	hp1	a0001	c0001	t0001	g0036	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19062	hp1	a0002	c0002	t0002	g0003	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19066	hp1	a0002	c0002	t0002	g0003	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19079	hp1	a0001	c0001	t0001	g0006	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19088	hp1	a0001	c0001	t0001	g0005	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20805	hp1	a0001	c0001	t0002	g0004	EUR	TSI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20905	hp1	a0001	c0001	t0001	g0006	SAS	GIH	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03471	hp1	a0001	c0001	t0002	g0031	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20300	hp1	a0002	c0002	t0002	g0009	AFR	USA	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20300	hp2	a0001	c0001	t0002	g0012	AFR	USA	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:48385382	G G	A A	1	a0002 a0002	8	HG01516.hp1 HG01981.hp1 NA18982.hp1 others(5): Show HG01516.hp1 HG01981.hp1 NA18982.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1	missense_variant	MODERATE	c.215G>A c.215G>A	p.Arg72His p.Arg72His	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/8	261/1209	215/567	72/188			chrX	48385382

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:48392799	G G	C C	1	a0001c0001t0003 a0001c0001t0003	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.48G>C c.48G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	830	chrX	48392799
chrX:48392893	G G	A A	1	a0001c0001t0004 a0001c0001t0004	2	NA18962.hp1 NA18986.hp1 NA18962.hp1 NA18986.hp1	3_prime_UTR_variant	MODIFIER	c.142G>A c.142G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	924	chrX	48392893
chrX:48393226	T T	C C	1	a0001c0001t0005 a0001c0001t0005	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.475T>C c.475T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	1257	chrX	48393226
chrX:48393240	A A	T T	5	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0002c0002t0002	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.489A>T c.489A>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	1271	chrX	48393240

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:48383574	C C	T T	9	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0043 others(6): Show a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049	22	HG00621.hp1 HG00642.hp1 HG00673.hp1 others(19): Show HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01516.hp2 HG01952.hp1 HG01978.hp1 HG02683.hp2 HG03130.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 NA18945.hp1 NA18953.hp1 NA18970.hp1 NA18977.hp1 NA19004.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-21+10C>T c.-21+10C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383574
chrX:48383613	C C	T T	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-21+49C>T c.-21+49C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383613
chrX:48383898	C C	CA CA	7	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0032 others(4): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0002g0034	12	HG00735.hp2 HG01884.hp1 HG01978.hp2 others(9): Show HG00735.hp2 HG01884.hp1 HG01978.hp2 HG01981.hp2 HG02083.hp1 HG02129.hp1 HG02145.hp1 HG02683.hp1 HG03239.hp1 HG03492.hp1 HG03688.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-20-115dupA c.-20-115dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAA CAA	14	a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0011 others(11): Show a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0003g0028 a0001c0001t0004g0004 a0002c0002t0002g0003 a0002c0002t0002g0024 a0002c0002t0002g0025	28	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(25): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01516.hp1 HG01943.hp1 HG01981.hp1 HG02074.hp1 HG02630.hp2 HG02698.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03239.hp2 HG03471.hp1 HG03579.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18944.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA19062.hp1 NA19066.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-20-116_-20-115dup others(2): Show c.-20-116_-20-115dupAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAAA CAAA	12	a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0015 others(9): Show a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0003g0018 a0001c0001t0004g0016 a0002c0002t0002g0009	16	HG01358.hp1 HG01433.hp1 HG01884.hp2 others(13): Show HG01358.hp1 HG01433.hp1 HG01884.hp2 HG02027.hp1 HG02080.hp2 HG02451.hp1 HG02717.hp1 HG02809.hp1 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG04199.hp1 NA18962.hp1 NA18999.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-20-117_-20-115dup others(3): Show c.-20-117_-20-115dupAAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383935	G G	A A	9	a0001c0001t0002g0003 a0001c0001t0002g0009 a0001c0001t0002g0015 others(6): Show a0001c0001t0002g0003 a0001c0001t0002g0009 a0001c0001t0002g0015 a0001c0001t0002g0026 a0001c0001t0004g0016 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	16	HG01074.hp1 HG01433.hp1 HG01516.hp1 others(13): Show HG01074.hp1 HG01433.hp1 HG01516.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02698.hp1 HG03017.hp1 HG04204.hp1 NA18962.hp1 NA18982.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-20-99G>A c.-20-99G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383935
chrX:48383979	G G	A A	1	a0002c0002t0002g0024 a0002c0002t0002g0024	1	NA18994.hp1 NA18994.hp1	intron_variant	MODIFIER	c.-20-55G>A c.-20-55G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383979
chrX:48384019	C C	T T	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.-20-15C>T c.-20-15C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48384019
chrX:48384542	C C	CT CT	7	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0002g0012 others(4): Show a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0030 a0001c0001t0002g0031	8	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(5): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 HG04115.hp1 NA18906.hp1 NA18953.hp1 NA20300.hp2	splice_region_variant&intron_variant	LOW	c.70-5dupT c.70-5dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384542
chrX:48384752	C C	T T	2	a0001c0001t0005g0041 a0001c0001t0005g0042 a0001c0001t0005g0041 a0001c0001t0005g0042	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.184+77C>T c.184+77C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48384752
chrX:48384925	A A	G G	1	a0001c0001t0002g0026 a0001c0001t0002g0026	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.184+250A>G c.184+250A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48384925
chrX:48384992	GTCTC GTCTC	G G	5	a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 others(2): Show a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0030 a0001c0001t0002g0031	6	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(3): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.184+335_184+338del others(4): Show c.184+335_184+338delCTCT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384992
chrX:48385012	CT CT	C C	5	a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 others(2): Show a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0005g0041 a0001c0001t0005g0042	5	HG01884.hp1 HG02132.hp1 NA18906.hp2 others(2): Show HG01884.hp1 HG02132.hp1 NA18906.hp2 NA19043.hp2 NA19056.hp1	intron_variant	MODIFIER	c.185-327delT c.185-327delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385012
chrX:48385245	A A	G G	2	a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0039 a0001c0001t0001g0040	2	HG02809.hp2 NA18943.hp1 HG02809.hp2 NA18943.hp1	intron_variant	MODIFIER	c.185-107A>G c.185-107A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48385245
chrX:48385562	GA GA	G G	30	a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 others(27): Show a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0034 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0004g0004 a0001c0001t0004g0016 a0001c0001t0005g0041 a0001c0001t0005g0042 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.280+126delA c.280+126delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385562
chrX:48385729	T T	C C	1	a0001c0001t0005g0041 a0001c0001t0005g0041	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.280+282T>C c.280+282T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48385729
chrX:48385920	G G	A A	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	HG01978.hp1 HG01978.hp1	intron_variant	MODIFIER	c.280+473G>A c.280+473G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48385920
chrX:48386132	C C	T T	5	a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 others(2): Show a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0030 a0001c0001t0002g0031	6	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(3): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.280+685C>T c.280+685C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48386132
chrX:48386321	T T	TA TA	30	a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 others(27): Show a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0034 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0004g0004 a0001c0001t0004g0016 a0001c0001t0005g0041 a0001c0001t0005g0042 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.280+883dupA c.280+883dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386321
chrX:48386364	T T	A A	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.280+917T>A c.280+917T>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48386364
chrX:48387682	A A	C C	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03516.hp2 HG03516.hp2	intron_variant	MODIFIER	c.330+322A>C c.330+322A>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48387682
chrX:48388683	C C	CA CA	19	a0001c0001t0001g0033 a0001c0001t0002g0003 a0001c0001t0002g0004 others(16): Show a0001c0001t0001g0033 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0020 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0034 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0004g0004 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024	37	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(34): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01943.hp1 HG01978.hp2 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02451.hp2 HG02698.hp1 HG02717.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18944.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.331-645dupA c.331-645dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388683
chrX:48388834	T T	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.331-512T>A c.331-512T>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48388834
chrX:48388950	T T	C C	5	a0001c0001t0001g0006 a0001c0001t0001g0043 a0001c0001t0001g0046 others(2): Show a0001c0001t0001g0006 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049	9	HG00621.hp1 HG00642.hp1 HG01081.hp2 others(6): Show HG00621.hp1 HG00642.hp1 HG01081.hp2 HG03130.hp1 HG03688.hp1 HG04115.hp1 NA18970.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.331-396T>C c.331-396T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48388950
chrX:48389159	G G	C C	2	a0001c0001t0005g0041 a0001c0001t0005g0042 a0001c0001t0005g0041 a0001c0001t0005g0042	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.331-187G>C c.331-187G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48389159
chrX:48389665	T T	TA TA	6	a0001c0001t0001g0033 a0001c0001t0002g0012 a0001c0001t0002g0021 others(3): Show a0001c0001t0001g0033 a0001c0001t0002g0012 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0030 a0001c0001t0002g0031	7	HG01884.hp2 HG01978.hp2 HG02451.hp1 others(4): Show HG01884.hp2 HG01978.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.466+192dupA c.466+192dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389665
chrX:48390015	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	2	HG02615.hp2 NA18966.hp1 HG02615.hp2 NA18966.hp1	intron_variant	MODIFIER	c.466+534G>A c.466+534G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390015
chrX:48390055	A A	G G	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG00735.hp1 HG00735.hp1	intron_variant	MODIFIER	c.466+574A>G c.466+574A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390055
chrX:48390308	C C	A A	2	a0001c0001t0005g0041 a0001c0001t0005g0042 a0001c0001t0005g0041 a0001c0001t0005g0042	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.466+827C>A c.466+827C>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390308
chrX:48390440	C C	T T	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.466+959C>T c.466+959C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390440
chrX:48390491	G G	A A	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.466+1010G>A c.466+1010G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390491
chrX:48390499	C C	T T	1	a0001c0001t0002g0031 a0001c0001t0002g0031	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.466+1018C>T c.466+1018C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390499
chrX:48390985	G G	C C	2	a0001c0001t0002g0021 a0001c0001t0002g0030 a0001c0001t0002g0021 a0001c0001t0002g0030	2	HG01884.hp2 HG02630.hp2 HG01884.hp2 HG02630.hp2	intron_variant	MODIFIER	c.467-884G>C c.467-884G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390985
chrX:48390991	T T	C C	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG03516.hp2 HG03516.hp2	intron_variant	MODIFIER	c.467-878T>C c.467-878T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390991
chrX:48391144	A A	AC AC	3	a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0002g0015 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0002g0015	3	HG00642.hp1 HG02027.hp1 NA18953.hp1 HG00642.hp1 HG02027.hp1 NA18953.hp1	intron_variant	MODIFIER	c.467-721dupC c.467-721dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391144
chrX:48391276	A A	G G	3	a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-593A>G c.467-593A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391276
chrX:48391310	G G	A A	1	a0001c0001t0003g0028 a0001c0001t0003g0028	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-559G>A c.467-559G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391310
chrX:48391521	T T	C C	3	a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-348T>C c.467-348T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391521
chrX:48391743	T T	C C	20	a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 others(17): Show a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0034 a0001c0001t0004g0004 a0001c0001t0004g0016 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	37	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(34): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.467-126T>C c.467-126T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391743
chrX:48392058	C C	T T	10	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0038 others(7): Show a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0038 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049	23	HG00621.hp1 HG00642.hp1 HG00673.hp1 others(20): Show HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01516.hp2 HG01952.hp1 HG01978.hp1 HG02615.hp1 HG02683.hp2 HG03130.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 NA18945.hp1 NA18953.hp1 NA18970.hp1 NA18977.hp1 NA19004.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.4+85C>T c.4+85C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392058
chrX:48392272	G G	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.4+299G>A c.4+299G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392272
chrX:48392277	C C	G G	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.4+304C>G c.4+304C>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392277
chrX:48392435	A A	T T	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.5-321A>T c.5-321A>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392435
chrX:48392445	A A	G G	45	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 others(42): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0034 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0004g0004 a0001c0001t0004g0016 a0001c0001t0005g0041 a0001c0001t0005g0042 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	86	HG00140.hp1 HG00621.hp1 HG00642.hp1 others(83): Show HG00140.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18953.hp1 NA18962.hp1 NA18966.hp1 NA18970.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19004.hp1 NA19043.hp2 NA19056.hp1 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19088.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.5-311A>G c.5-311A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392445
chrX:48392506	C C	T T	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.5-250C>T c.5-250C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392506
chrX:48392628	C C	T T	2	a0001c0001t0002g0011 a0001c0001t0002g0017 a0001c0001t0002g0011 a0001c0001t0002g0017	3	HG00140.hp1 HG03239.hp2 HG03516.hp1 HG00140.hp1 HG03239.hp2 HG03516.hp1	intron_variant	MODIFIER	c.5-128C>T c.5-128C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392628
chrX:48392659	C C	G G	51	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(48): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0017 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0034 a0001c0001t0003g0014 a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0004g0004 a0001c0001t0004g0016 a0001c0001t0005g0041 a0001c0001t0005g0042 a0002c0002t0002g0003 a0002c0002t0002g0009 a0002c0002t0002g0024 a0002c0002t0002g0025	103	HG00140.hp1 HG00621.hp1 HG00642.hp1 others(100): Show HG00140.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01258.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18953.hp1 NA18955.hp1 NA18962.hp1 NA18966.hp1 NA18970.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp1 NA18999.hp2 NA19004.hp1 NA19043.hp2 NA19056.hp1 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19088.hp1 NA19091.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.5-97C>G c.5-97C>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392659

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SSX4_chrX_48378539_48398347 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 2)

Coding Level Haplotype Info (Total: 2)

Transcript Level Haplotype Info (Total: 6)

Genebody Level Haplotype Info (Total: 52)

Haplotype Details by Sample (Haploid Level) (Total: 104)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 4)

Genebody Level Haplotype Variants (Intron) (Total: 47)

Annotation (Repeats)

Annotation (SNP Array)