JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ST8SIA6_chr10_17310421_17459595	0/0	a0003	398	2	0	1	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	a0004	398	2	0	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	a0005	398	1	0	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
STAB1_chr3_52490338_52529495	0/0	a0001	2570	141	21	22	62	10	26	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/1	a0002	2570	105	10	26	58	4	6	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0003	2570	65	48	11	3	2	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0004	2570	10	0	2	8	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0005	2570	6	0	0	6	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0006	2570	4	0	3	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0007	2570	3	0	0	3	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0008	2570	2	1	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0009	2570	2	1	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0010	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0011	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0012	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0013	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	1/0	a0014	2570	1	0	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0015	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0016	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0017	2570	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0018	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0019	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0020	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0021	2570	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0022	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0023	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0024	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0025	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0026	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0027	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0028	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0029	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0030	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0031	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0032	2570	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0033	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0034	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0035	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0036	2570	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0037	2570	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0038	2570	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	a0039	2570	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB2_chr12_103582273_103771719	1/0	a0001	2551	110	35	24	25	8	17	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/1	a0002	2551	46	5	8	22	4	6	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0003	2551	13	1	7	4	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0004	2551	9	8	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0005	2551	8	0	6	1	1	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0006	2551	8	2	2	3	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0007	2551	6	1	3	2	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0008	2551	6	5	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719