JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STAB2_chr12_103582273_103771719	0/0	a0009	2551	3	2	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0010	2551	2	0	0	0	0	2	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0011	2551	2	0	0	0	0	2	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0012	2551	2	0	1	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0013	2551	2	2	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0014	2551	2	1	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0015	2551	2	2	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0016	2551	2	2	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0017	2551	2	2	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0018	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0019	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0020	2551	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0021	2551	1	0	0	0	1	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0022	2551	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0023	2551	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0024	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0025	2551	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0026	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0027	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0028	2551	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0029	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0030	2551	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0031	2551	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0032	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0033	2551	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0034	2551	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0035	2551	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0036	2551	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0037	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0038	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0039	2551	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0040	2551	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0041	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0042	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0043	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0044	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0045	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0046	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0047	2551	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	a0048	2551	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAC2_chr17_39205541_39230945	1/1	a0001	411	363	88	73	142	17	41	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	a0002	411	2	1	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	a0003	411	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	a0004	411	1	0	0	0	0	1	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	a0005	411	1	0	0	0	1	0	copy fasta	STAC2	chr17	39205541	39230945
STAC3_chr12_57238458_57256187	1/1	a0001	364	426	95	70	197	18	44	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	a0002	364	2	1	1	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	a0003	364	1	0	1	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	a0004	364	1	0	0	1	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC_chr3_36375504_36553007	1/1	a0001	402	301	73	52	130	8	36	copy fasta	STAC	chr3	36375504	36553007