JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BAZ2A_chr12_56590596_56635326	1/1	a0001	1903	300	84	50	123	13	28	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0002	1903	3	0	2	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0003	1903	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0004	1903	3	0	0	3	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0005	1903	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0006	1903	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0007	1903	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0008	1903	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0009	1903	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0010	1903	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	a0011	1903	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2B_chr2_159313979_159621548	1/0	a0001	2168	126	28	30	49	7	11	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/1	a0002	2168	39	17	7	10	1	3	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0003	2168	11	1	1	5	1	3	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0004	2168	10	4	0	6	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0005	2168	7	0	0	5	0	2	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0006	2168	5	2	1	1	0	1	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0007	2168	3	0	0	3	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0008	2168	2	0	0	2	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0009	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0010	2168	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0011	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0012	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0013	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0014	2168	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0015	2168	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0016	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0017	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0018	2168	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0019	2168	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0020	2168	1	0	0	0	1	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	a0021	2168	1	0	1	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BBC3_chr19_47215824_47236199	1/1	a0001	193	410	94	68	182	16	48	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	a0002	193	2	0	0	2	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBIP1_chr10_110893730_110924180	1/1	a0001	92	417	91	60	204	14	46	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	a0002	92	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBLN_chr9_128155265_128168924	1/1	a0001	83	394	98	64	170	18	42	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	a0002	83	2	0	0	0	0	2	copy fasta	BBLN	chr9	128155265	128168924
BBOF1_chr14_74014349_74071092	0/0	a0000	0	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0001	529	111	18	16	53	3	21	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	1/0	a0002	529	103	37	23	27	8	7	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/1	a0003	529	80	3	9	63	1	3	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0004	529	56	9	22	15	2	8	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0005	529	11	9	2	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0006	529	11	11	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0007	529	3	3	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0008	529	2	0	0	2	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0009	529	2	2	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0010	529	2	0	0	2	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	a0011	529	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092