JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STARD13_chr13_33098137_33290755	0/0	a0006	1113	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0007	1113	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0008	1113	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0009	1113	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0010	1113	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	a0011	1113	1	0	0	0	0	1	copy fasta	STARD13	chr13	33098137	33290755
STARD3NL_chr7_38173245_38235669	1/1	a0001	234	401	86	72	186	14	41	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	a0002	234	2	2	0	0	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	a0003	234	1	0	0	0	0	1	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3_chr17_39632144_39669201	1/0	a0001	445	181	66	29	64	7	14	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/1	a0002	445	125	16	26	53	9	20	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	a0003	445	4	4	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	a0004	445	2	0	0	2	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	a0005	445	2	0	0	2	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	a0006	445	1	0	1	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	a0007	445	1	0	0	1	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD4_chr5_111491033_111517535	1/1	a0001	205	430	98	72	198	16	44	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	a0002	205	2	0	2	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD5_chr15_81304053_81329141	1/1	a0001	213	441	97	70	214	14	44	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0002	213	5	0	0	5	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0003	213	2	1	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0004	75	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0005	213	1	0	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0006	213	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	a0007	213	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD6_chr18_54319492_54362858	1/1	a0001	220	319	83	68	121	10	35	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	a0002	220	23	8	4	2	4	5	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	a0003	220	5	0	0	5	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	a0004	18	2	0	2	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	a0005	220	1	1	0	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD7_chr2_96179859_96213827	1/1	a0001	370	307	76	54	145	6	24	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0002	370	45	3	8	22	0	12	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0003	370	2	1	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0004	370	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0005	304	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0006	370	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	a0007	370	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD8_chrX_68642666_68730836	1/1	a0001	1103	165	46	26	70	4	17	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0002	1103	8	7	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0003	1103	8	7	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0004	1103	2	0	1	0	1	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0005	1103	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0006	1103	2	0	0	0	0	2	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0007	1103	2	0	2	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0008	1103	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0009	1103	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0010	1103	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0011	1103	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0012	1103	1	0	0	0	0	1	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0013	1103	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836