JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STARD8_chrX_68642666_68730836	0/0	a0014	1102	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0015	1103	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0016	1103	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	a0017	1103	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD9_chr15_42570606_42725998	1/0	a0001	4700	72	7	15	34	1	14	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0002	4700	46	27	6	8	2	3	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0003	4700	11	10	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0004	4700	9	0	0	9	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0005	4700	7	6	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0006	4700	6	0	1	2	0	3	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0007	4700	4	0	4	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0008	4700	4	0	0	2	0	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0009	4700	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0010	4700	3	2	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0011	4700	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0012	4700	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0013	4700	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0014	4700	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0015	4700	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0016	4700	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0017	4700	2	0	2	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0018	4694	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0019	4700	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0020	4700	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0021	4700	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0022	4700	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0023	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0024	4700	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0025	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0026	4700	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0027	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0028	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0029	4700	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0030	4700	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0031	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0032	3163	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0033	4700	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0034	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0035	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0036	4700	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0037	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0038	4700	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0039	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0040	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0041	4700	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0042	4700	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/1	a0043	4700	1	0	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	a0044	4700	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STAR_chr8_38137700_38155952	1/1	a0001	285	430	88	75	204	18	43	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	a0002	285	2	2	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952