JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STAR_chr8_38137700_38155952	0/0	a0003	285	1	0	1	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	a0004	285	1	0	0	0	0	1	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	a0005	285	1	0	0	1	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	a0006	285	1	0	0	1	0	0	copy fasta	STAR	chr8	38137700	38155952
STAT1_chr2_190964149_191019171	1/1	a0001	750	412	92	74	194	14	36	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	a0002	750	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	a0003	750	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT2_chr12_56336597_56365107	1/1	a0001	851	219	61	33	85	10	28	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0002	851	20	19	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0003	851	18	0	4	12	2	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0004	851	5	0	5	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0005	851	2	0	2	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0006	353	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0007	851	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0008	851	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	a0009	851	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT3_chr17_42308324_42393442	1/1	a0001	770	295	87	37	131	12	26	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	a0002	770	5	0	5	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	a0003	770	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	a0004	770	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT4_chr2_191024576_191155994	1/1	a0001	748	287	93	44	107	14	27	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	a0002	748	1	0	0	1	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	a0003	748	1	0	0	0	0	1	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	a0004	748	1	1	0	0	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT5A_chr17_42283498_42316943	1/1	a0001	794	339	78	57	143	12	47	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	a0002	794	16	13	2	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	a0003	794	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	a0004	794	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	a0005	794	1	0	1	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5B_chr17_42194177_42281391	1/1	a0001	787	255	82	35	94	8	34	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	a0002	787	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	a0003	787	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	a0004	787	1	0	1	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	a0005	787	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	a0006	787	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT6_chr12_57090408_57116362	1/1	a0001	847	359	88	74	141	14	40	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	a0002	847	9	2	4	3	0	0	copy fasta	STAT6	chr12	57090408	57116362
STATH_chr4_69990966_70007570	1/1	a0001	62	407	86	78	179	18	44	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	a0002	52	3	0	0	3	0	0	copy fasta	STATH	chr4	69990966	70007570
STAU1_chr20_49108339_49193334	1/1	a0001	577	356	81	63	160	8	42	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	a0002	577	5	0	5	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	a0003	577	3	3	0	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	a0004	577	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	a0005	577	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU2_chr8_73415369_73751840	0/1	a0001	570	206	60	36	86	8	15	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	1/0	a0002	570	25	13	3	3	0	5	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	a0003	570	6	0	5	1	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	a0004	570	2	0	2	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	a0005	570	1	1	0	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STBD1_chr4_76301733_76316130	1/0	a0001	358	438	93	78	207	18	41	copy fasta	STBD1	chr4	76301733	76316130