JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STBD1_chr4_76301733_76316130	0/0	a0002	358	2	2	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	a0003	358	1	0	0	0	0	1	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	a0004	358	1	0	0	1	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	a0005	358	1	1	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/1	a0006	25	1	0	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STC1_chr8_23836929_23859806	1/1	a0001	247	442	98	78	200	16	48	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	a0002	247	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	a0003	247	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC2_chr5_173309723_173333414	0/0	a0001	302	432	95	81	190	18	48	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0002	302	6	0	1	5	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0003	302	3	0	0	3	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0004	302	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0005	302	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0006	302	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0007	302	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0008	302	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	a0009	302	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STEAP1B_chr7_22414444_22505188	1/0	a0001	264	153	30	27	75	4	16	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0002	264	121	27	15	61	1	17	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/1	a0003	264	61	14	11	28	0	7	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0004	264	26	4	9	11	1	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0005	264	15	6	4	0	2	3	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0006	264	4	0	0	4	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0007	264	2	0	0	2	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0008	264	1	0	0	1	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	a0009	264	1	1	0	0	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1_chr7_90149469_90169827	0/0	a0000	0	1	1	0	0	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	1/1	a0001	339	416	91	67	197	16	43	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	a0002	339	2	0	0	2	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	a0003	339	1	0	1	0	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	a0004	339	1	0	0	1	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	a0005	339	1	0	0	0	0	1	copy fasta	STEAP1	chr7	90149469	90169827
STEAP2_chr7_90206740_90242683	0/0	a0001	490	251	62	30	130	5	24	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/1	a0002	490	111	17	20	57	3	13	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	1/0	a0003	490	19	5	10	0	2	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0004	490	3	2	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0005	490	2	0	0	0	0	2	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0006	490	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0007	490	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0008	490	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	a0009	490	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP3_chr2_119218834_119270652	1/1	a0001	498	298	63	57	130	13	33	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0002	498	34	30	3	0	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0003	498	5	0	0	5	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0004	498	5	0	0	0	0	5	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0005	498	2	2	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0006	498	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0007	498	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0008	498	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	a0009	498	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652