JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STEAP4_chr7_88265892_88311894	0/0	a0001	459	235	69	40	101	4	21	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	1/0	a0002	459	48	0	14	21	3	9	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/1	a0003	459	28	5	9	2	5	6	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	a0004	459	3	3	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	a0005	459	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	a0006	459	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	a0007	459	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	a0008	459	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEEP1_chrX_119533149_119570409	1/1	a0001	222	293	76	53	121	11	30	copy fasta	STEEP1	chrX	119533149	119570409
STH_chr17_45994250_46004694	0/1	a0001	128	394	95	72	182	14	30	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	a0002	128	23	3	8	1	3	8	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	a0003	128	1	0	0	1	0	0	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	a0004	128	1	0	0	0	1	0	copy fasta	STH	chr17	45994250	46004694
STIL_chr1_47245139_47319147	0/0	a0001	1288	193	59	22	99	3	10	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	1/1	a0002	1288	124	4	25	71	7	15	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0003	1288	57	23	13	2	5	14	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0004	1288	4	4	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0005	1288	3	3	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0006	1288	2	0	0	2	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0007	1288	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0008	1288	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0009	1288	1	0	0	0	1	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0010	1288	1	0	0	0	0	1	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0011	1288	1	1	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0012	1288	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0013	1288	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0014	1288	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	a0015	1288	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIM1_chr11_3850664_4098208	1/1	a0001	716	287	65	46	133	10	31	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0002	716	4	4	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0003	716	4	4	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0004	716	2	2	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0005	716	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0006	716	1	1	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	a0007	716	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM2_chr4_26855841_27030381	1/1	a0001	30	336	80	58	154	8	34	copy fasta	STIM2	chr4	26855841	27030381
STIMATE_chr3_52831733_52902548	1/1	a0001	294	331	82	69	132	6	40	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	a0002	294	3	0	3	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STING1_chr5_139470533_139487758	0/1	a0001	379	209	49	38	85	8	28	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0002	379	124	2	14	89	5	14	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	1/0	a0003	379	60	12	15	25	3	4	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0004	379	27	26	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0005	379	4	4	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0006	379	3	3	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0007	379	3	0	0	3	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0008	379	2	0	1	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0009	379	1	0	1	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	a0010	379	1	0	1	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STIP1_chr11_64181171_64209543	1/1	a0001	543	376	87	69	164	14	40	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	a0002	543	1	1	0	0	0	0	copy fasta	STIP1	chr11	64181171	64209543