JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STIP1_chr11_64181171_64209543	0/0	a0003	543	1	0	1	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STK10_chr5_172037079_172193224	1/1	a0001	968	222	86	47	52	9	26	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0002	968	4	4	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0003	968	2	0	2	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0004	968	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0005	968	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0006	968	1	0	0	0	1	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	a0007	968	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK11IP_chr2_219592857_219621451	0/0	a0001	1088	128	25	27	49	7	20	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/1	a0002	1088	115	4	29	59	7	15	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	1/0	a0003	1088	59	51	6	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0004	1088	10	0	8	2	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0005	1088	8	8	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0006	1088	6	6	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0007	1088	2	0	0	2	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0008	1088	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0009	1088	1	0	0	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0010	1088	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0011	1088	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0012	1088	1	0	0	0	1	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0013	1088	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0014	1088	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0015	1087	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0016	1088	1	0	0	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0017	1088	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0018	1088	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0019	1088	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0020	557	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	a0021	1088	1	0	0	0	1	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11_chr19_1200778_1233431	1/1	a0001	433	393	90	78	161	16	46	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	a0002	433	6	0	0	6	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	a0003	433	3	0	0	3	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	a0004	433	2	0	2	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	a0005	433	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	a0006	433	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK16_chr2_219240479_219255337	1/1	a0001	305	401	82	70	185	16	46	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	a0002	305	4	0	4	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	a0003	305	2	0	2	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	a0004	305	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	a0005	305	1	0	0	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	a0006	305	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK17A_chr7_43578108_43632379	0/1	a0001	414	277	61	64	114	12	25	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	1/0	a0002	414	76	5	11	44	5	10	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0003	414	11	0	0	11	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0004	414	6	6	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0005	414	5	0	0	5	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0006	414	4	3	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0007	414	4	0	0	4	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0008	414	2	2	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0009	414	2	2	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379