JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
STK17A_chr7_43578108_43632379	0/0	a0010	414	1	0	0	0	1	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0011	414	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0012	414	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0013	414	1	0	0	0	0	1	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	a0014	414	1	1	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17B_chr2_196128583_196176578	1/1	a0001	372	357	96	62	147	13	37	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	a0002	372	2	0	0	1	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	a0003	372	1	0	0	0	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK19_chr6_31967363_31986446	0/1	a0001	254	353	61	57	188	14	32	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	a0002	254	64	27	10	16	3	8	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	a0003	254	14	6	3	2	1	2	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	a0004	254	2	0	0	2	0	0	copy fasta	STK19	chr6	31967363	31986446
STK24_chr13_98440185_98582107	1/1	a0001	431	322	80	64	122	16	38	copy fasta	STK24	chr13	98440185	98582107
STK25_chr2_241487670_241513584	1/1	a0001	426	444	92	76	210	16	48	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	a0002	431	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	a0003	426	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK26_chrX_132018302_132080943	1/1	a0001	416	241	66	37	97	11	28	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	a0002	416	2	0	0	2	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	a0003	416	1	0	1	0	0	0	copy fasta	STK26	chrX	132018302	132080943
STK31_chr7_23705219_23837513	1/1	a0001	1019	154	40	27	67	6	12	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0002	1019	91	14	17	47	5	8	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0003	1019	91	13	16	50	1	11	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0004	1019	16	5	4	5	1	1	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0005	1019	12	1	7	0	2	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0006	1019	5	5	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0007	1019	5	0	0	0	0	5	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0008	1019	4	0	0	3	0	1	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0009	1019	4	2	0	1	1	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0010	1019	3	0	0	3	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0011	1019	2	0	0	0	0	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0012	1019	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0013	1019	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0014	1019	2	0	2	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0015	1019	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0016	996	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0017	1019	1	0	0	1	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0018	1019	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0019	1019	1	0	0	1	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0020	1019	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0021	1019	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0022	1019	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0023	1019	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	a0024	1019	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK32A_chr5_147230026_147392855	1/1	a0001	396	313	88	54	122	10	37	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	a0002	396	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	a0003	396	1	0	0	0	0	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	a0004	396	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32B_chr4_5046480_5505989	1/1	a0001	414	118	58	30	18	4	6	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	a0002	414	49	9	9	25	2	4	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	a0003	414	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989